Gene Smed_3679 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_3679 
Symbol 
ID5318786 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009620 
Strand
Start bp117527 
End bp118084 
Gene Length558 bp 
Protein Length185 aa 
Translation table11 
GC content55% 
IMG OID640775492 
Producthypothetical protein 
Protein accessionYP_001312425 
Protein GI150375829 
COG category[S] Function unknown 
COG ID[COG5381] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.744055 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.00232775 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACGACCT TGTATGGACT GGAGGATCTC GCCGTCGGGC CGGGCGAGAA TGTGACGAAA 
CTCCGTCTCT TCGACGGCCC GCTCGATCTC GGGTGGAAAC ATTGCGCGAT GACCTCCGAT
TTTGTGGCCG AGTTCGCTGC CCTGCGCTAC AAAACGTCTC GCGTCGTCTA CAAGGAGGTG
CGTCACAATG TCGGCTATCT GACCAATGAG CTGATAGAGA ATGCTGTGAA ATTCCGCGCT
GGCGGGGAAA TCGTCGTGGA GGCATCGATC GCCTCCAACA CATTTCGGAC AAAAGTTTCC
AATCTCGTGG ACAAAGGAAC AGCCGACACG TTCCGCCACA TCCTTTCGGA AATAACGATA
GGAGATCCAT CCGACCTTCT GATACAGCGG ATAGAGGCAA ATGCAACAGG TTCGGGATCG
GGTTCCGGGC TTGGACTTCT CACCCTCATG AGCGATTATG GTGCTCACTT CGCGTGGGTT
TTTGGATCCG GCGAAGAGGA TGGCAAGATC CCGCTGGAGA CCTATGCCTC AATCGCAATT
CCCGACCTCT CGAATTGA
 
Protein sequence
MTTLYGLEDL AVGPGENVTK LRLFDGPLDL GWKHCAMTSD FVAEFAALRY KTSRVVYKEV 
RHNVGYLTNE LIENAVKFRA GGEIVVEASI ASNTFRTKVS NLVDKGTADT FRHILSEITI
GDPSDLLIQR IEANATGSGS GSGLGLLTLM SDYGAHFAWV FGSGEEDGKI PLETYASIAI
PDLSN