Gene Smed_3655 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_3655 
Symbol 
ID5318669 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009620 
Strand
Start bp92760 
End bp94289 
Gene Length1530 bp 
Protein Length509 aa 
Translation table11 
GC content62% 
IMG OID640775468 
ProductABC transporter related 
Protein accessionYP_001312401 
Protein GI150375805 
COG category[R] General function prediction only 
COG ID[COG3845] ABC-type uncharacterized transport systems, ATPase components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.238424 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCTACG CGATCGAAAT GCAGGCCATC ACCAAGCGCT TCGGCACGCT GGCCGCCAAC 
AAAGACGTGA CGTTCAGCGT GCGCAGGGGC GAAATCCACG CGCTCGTCGG CGAGAACGGC
GCCGGTAAGA CGACGTTGAT GAACGTGCTG TTCGGACTGC ACCAGCCCGA CGAGGGCGTT
CTGGCCATCA ACGGCCGGAC CGTTAAGATG GATTCGCCAC GCACTGCCAT CGCGCTCGGT
CTCGGCATGG TGCATCAGCA TTTCAAGCTC GTCCCCTCGC TGACCGTCGC CGAGAACATC
TTCCTCGGCA TGGAAATGAC CCGAAACGGG CTTATCGATC GCAAGGCCCA GTCGGCAAAG
GTCGCGGAGC TTTCCAGCGC CTTCGGCCTG CATGTAGACC CGGAGCGCCG CGTGATGGAT
CTGTCTGTCG GGATCGAGCA GCGCGTCGAG ATTCTGAAGG TCCTCGTTCG CGGTGCCGAA
ATCATCATTC TCGACGAGCC GACCGCCGTC CTGACGCCGC AGGAAAGCCG CGACCTCTTT
CGAATTTTGC GATCCTTCAC GGAGAAGGGC ATGACGGTGG TGTTCATTTC GCACCATCTC
ACCGAGGTAA TGGAAGTTTC CGACACCGTG ACCGTGTTGC GCGACGGTCA GGTCGTCGGA
ACGAAACCGA CGCGTGAACT GACGGAAGAC GAACTGGTCC GCATGATGGT CGGCCGCGAC
GTCAGCTTTG CCCGTCGCGA ACGGCAGCCG GCAAATGGCG GGACGGTTTT GAATCTAAGC
GAAGTCTGCG CCCGCGACGA CCGCGGCCTC CCCACCTTGC GCGATGTCAG CGTCGAGGTT
CGCGCAGGCG AAATTGTCGG CGTCGTCGGT GTCGACGGCA ACGGCCAGAC GGAACTCGCC
GAGGTAATTT CGGGACTGCG TCCGGTGAGC TATGGCACGA TATCGCTCGC TGGCACCGCG
CTTGAAAACG CCGACCCACT GACAATCCGC AAGTCAGGAC TTTCGCATGT GCCCGGCAAC
CGGCTTGCGC GTGGCGTCGA TGCGTCGGCA TCCATCGCCT CCAACATTCT GATGGGCCGC
CATCAAACGG CTCCTTGGGT ACGCCGCGGC ATTGTCCGCT GGTCCTATGT ACGCGAACAG
GCGGGCAAGC TGATCCGCCA GTTCGAGATC CGCGCGTCCA GCGAGCGTGC TCTCGTGAAG
ACGCTATCGG GCGGCAATAT GCAGAAGGTG GTGCTCGCCC GGGAATTTTC GCAGAACATG
CCCTTCCTCC TGATCGACCA GCCGACCCGC GGTGTCGATA TCGGTGCGAT GGAGGGCATT
CACGACGAGA TCATGCGGCA GCGCAATTCC GGCGCCGCAA TCCTGCTGAT CTCCGTGCAG
CTGGACGAAA TCCTCAAGCT TGCGGATCGG ATTCTCGTCA TGTTCGGGGG ACGCATCGTC
GGCGAGGTGG ATCCGGAAAG CACGACCGAG GACGAAATCG GTTTCCTTAT GGCCGGCCGC
GCATCGAGCG AGGCGAAAGT GGCATCATGA
 
Protein sequence
MTYAIEMQAI TKRFGTLAAN KDVTFSVRRG EIHALVGENG AGKTTLMNVL FGLHQPDEGV 
LAINGRTVKM DSPRTAIALG LGMVHQHFKL VPSLTVAENI FLGMEMTRNG LIDRKAQSAK
VAELSSAFGL HVDPERRVMD LSVGIEQRVE ILKVLVRGAE IIILDEPTAV LTPQESRDLF
RILRSFTEKG MTVVFISHHL TEVMEVSDTV TVLRDGQVVG TKPTRELTED ELVRMMVGRD
VSFARRERQP ANGGTVLNLS EVCARDDRGL PTLRDVSVEV RAGEIVGVVG VDGNGQTELA
EVISGLRPVS YGTISLAGTA LENADPLTIR KSGLSHVPGN RLARGVDASA SIASNILMGR
HQTAPWVRRG IVRWSYVREQ AGKLIRQFEI RASSERALVK TLSGGNMQKV VLAREFSQNM
PFLLIDQPTR GVDIGAMEGI HDEIMRQRNS GAAILLISVQ LDEILKLADR ILVMFGGRIV
GEVDPESTTE DEIGFLMAGR ASSEAKVAS