Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_3652 |
Symbol | |
ID | 5318399 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009620 |
Strand | - |
Start bp | 89709 |
End bp | 90518 |
Gene Length | 810 bp |
Protein Length | 269 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640775465 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_001312398 |
Protein GI | 150375802 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.368434 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.604753 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGCTGACT TTTCAGGAAA AACCGTCCTC GTTACCGGCG GGGCCGGCGT GATTGGAAAA AGCGCCGCGA AACTCTTCCT CGAGCGCGGC GCCAATGTCG TACTTGCCGA TATCGACGCC GGGAAGCTGG AGACGGCGGC AGAGGCTCTG AACGGAGGAG AACGGGTCAG CACGATCCCT GGGGATCTTT CTGAGACCGA GACCGCAAAA GCAGCCGTGG ACCATGCTGT CGGTGTGTAC GGCAAGCTGG ATATTCTGTT CAACAATGCC GGCATCTCGG GAAAGGTCGC TCCCGTCCAC CTGCTGGACG TCGACGCATG GGACGACATC GTCAAGGTGA ACCTGCGCAG CATGTTCCTG ATGCTCAAAT TCGCTGCATC GAACATGGTA GCGCGGAAAT CAGGCTCGAT CATCAATATG GCGTCATCAA TGTCCGGCTG GGACGTCCTT TCCGGCGGAG CCGGCTATGC ATCCACCAAG CACGGCGTGG TGGGTCTCAC CAAGGTGGCG GCACTCGATC TTGCCCGCTA CCGCATTCGC GTCAACGCCA TTTGCCCCGG CGTCATCGAG ACCACGCTCG GCGTACCGGG CTTGGGCGAG GACAAGGGTA GCTCTGCGGT CGAGCATTTC GCAGACCGTA TCCCGTTGCG CCGGATCGGC CAGCCGGCGG ATGTCGCAGA GGTGGTGCTC TTCCTGGCTT CGGACGCTGC CCGCCACGTC AACGGAGCGG CCTGGCTGAT CGACGGCGGT CAGACGCTGC AAAGCTTTTC CAACGCCCCG GAAGAGGGAG TCTATCCGTT GGAATCGTAG
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Protein sequence | MADFSGKTVL VTGGAGVIGK SAAKLFLERG ANVVLADIDA GKLETAAEAL NGGERVSTIP GDLSETETAK AAVDHAVGVY GKLDILFNNA GISGKVAPVH LLDVDAWDDI VKVNLRSMFL MLKFAASNMV ARKSGSIINM ASSMSGWDVL SGGAGYASTK HGVVGLTKVA ALDLARYRIR VNAICPGVIE TTLGVPGLGE DKGSSAVEHF ADRIPLRRIG QPADVAEVVL FLASDAARHV NGAAWLIDGG QTLQSFSNAP EEGVYPLES
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