Gene Smed_3652 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_3652 
Symbol 
ID5318399 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009620 
Strand
Start bp89709 
End bp90518 
Gene Length810 bp 
Protein Length269 aa 
Translation table11 
GC content61% 
IMG OID640775465 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_001312398 
Protein GI150375802 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.368434 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.604753 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGCTGACT TTTCAGGAAA AACCGTCCTC GTTACCGGCG GGGCCGGCGT GATTGGAAAA 
AGCGCCGCGA AACTCTTCCT CGAGCGCGGC GCCAATGTCG TACTTGCCGA TATCGACGCC
GGGAAGCTGG AGACGGCGGC AGAGGCTCTG AACGGAGGAG AACGGGTCAG CACGATCCCT
GGGGATCTTT CTGAGACCGA GACCGCAAAA GCAGCCGTGG ACCATGCTGT CGGTGTGTAC
GGCAAGCTGG ATATTCTGTT CAACAATGCC GGCATCTCGG GAAAGGTCGC TCCCGTCCAC
CTGCTGGACG TCGACGCATG GGACGACATC GTCAAGGTGA ACCTGCGCAG CATGTTCCTG
ATGCTCAAAT TCGCTGCATC GAACATGGTA GCGCGGAAAT CAGGCTCGAT CATCAATATG
GCGTCATCAA TGTCCGGCTG GGACGTCCTT TCCGGCGGAG CCGGCTATGC ATCCACCAAG
CACGGCGTGG TGGGTCTCAC CAAGGTGGCG GCACTCGATC TTGCCCGCTA CCGCATTCGC
GTCAACGCCA TTTGCCCCGG CGTCATCGAG ACCACGCTCG GCGTACCGGG CTTGGGCGAG
GACAAGGGTA GCTCTGCGGT CGAGCATTTC GCAGACCGTA TCCCGTTGCG CCGGATCGGC
CAGCCGGCGG ATGTCGCAGA GGTGGTGCTC TTCCTGGCTT CGGACGCTGC CCGCCACGTC
AACGGAGCGG CCTGGCTGAT CGACGGCGGT CAGACGCTGC AAAGCTTTTC CAACGCCCCG
GAAGAGGGAG TCTATCCGTT GGAATCGTAG
 
Protein sequence
MADFSGKTVL VTGGAGVIGK SAAKLFLERG ANVVLADIDA GKLETAAEAL NGGERVSTIP 
GDLSETETAK AAVDHAVGVY GKLDILFNNA GISGKVAPVH LLDVDAWDDI VKVNLRSMFL
MLKFAASNMV ARKSGSIINM ASSMSGWDVL SGGAGYASTK HGVVGLTKVA ALDLARYRIR
VNAICPGVIE TTLGVPGLGE DKGSSAVEHF ADRIPLRRIG QPADVAEVVL FLASDAARHV
NGAAWLIDGG QTLQSFSNAP EEGVYPLES