| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3638 |
|---|
| Symbol | |
|---|
| ID | 5318180 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009620 |
|---|
| Strand | - |
|---|
| Start bp | 72174 |
|---|
| End bp | 73700 |
|---|
| Gene Length | 1527 bp |
|---|
| Protein Length | 508 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640775451 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001312384 |
|---|
| Protein GI | 150375788 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1129] ABC-type sugar transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCCACG GTAGCATGCA TCAGTCGGCA AGCGCGGCAC GTACGGACCA GCCGCTTCTG
TCTCTCCGAA ACATCAATAT GACCTTCGGC GGCGTCAAGG CGCTTAAGAA TGTGACCTTC
GAGGTCCGAC CAGGCGAGGT GCATTGCCTC GCCGGTGAGA ACGGCTCCGG CAAGAGCACG
CTGATCAAGG TGATCACGGG CGTCTATCGG CCAGCGGAAG GGGCGATCAT CGAATATGAC
GGTGATGTCT ATCCGCATAT GTCGCCGGTC ACCGCGCAAG AGCGCGGCAT TCAGGTCATC
TGGCAGGACC TTGCACTTTT CCCGGAAATG AGCGTCGCGG AGAACATAGC GTTCCACGAA
GTCCTTGGCC GTCCGCGGCT GGTCGATTAC AGCCGCATGC GCCAGATTGC GATCGAAGCG
CTGAGCCGGC TCGGCATCAC GCTCGATGTG GATCTGCCGC TCAAGGAATA TGCGATCGCC
CAGCGTCAGA TCGTGGCGAT CGCCCGAGCG CTCGTCGGTG AGGCGAAAGT TGTCTTCATG
GATGAGCCGA CGGCGTCGCT GACGCAGTCG GAGACGGATT ATCTCCTCGA GATCGTTCGC
GGCCTGTCGG CCTCCGGCGT TGCGGTTGTC TTCGTCAGCC ATCGTCTGGC GGAGGTTCTT
GAGATTTCGA GCCGGATCAC CGTTCTGCGC GACGGTGCGC TTGTCGGCGT GTATCCCGCC
GACGGCATGA CGCAGTCGAA AATCACTGAA CTCATGACCG GCAAGACCTT CGATCAGCAC
GTGCGCGCAC GCGCGAAGGA CGACCAGCCG GTCGTGCTCG ACGTTCGCGG TCTTGGCAGT
CCGGGCCAGT TCGAAGATGT TTCACTGACC GTCCGCCGTG GTGAGACGGT GGGGATAACC
GGTCTCCTGG GGGCCGGGCG GACCGAATTG GCGCTCGCGC TTTTCGGCAT GCTGAAGCCT
ACATCTGGGA CGTTCAGCAT CGATGGCCGG GAGGCTCGCT TCGCTTCGAA CCGCGATGCG
ATCAAGGCCG GCGTCGCCTA TCTGTCGGAG GACCGATTAT CGCTCGGGCT CATTCAGCCG
CAGTCGATCG CCGACAATCT CGTGATCGCA TCGCTTCACA AGATTCTCTC CGGCGGCCTT
CTCGCCGATG ACCGTAAACG CAGCCTCGTC GCCCGCTGGA TCGCCGATCT CGGCGTCAAG
ATCGGCCATC AGGCCGACGC GATATCGACG CTTTCCGGCG GCAACCAGCA GCGGGTGGCG
ATCGCCAAAT GGCTGGCCAC CGATCCCAAG CTTTTGATCC TCGACTCCCC CACGGTCGGG
GTCGATGTCG GGGCGCGTGC CGGTATCTTC GACATCGTCG CCAAGCTCGC CGAGAGCGGG
CTTGCGATTA TTCTGATCTC GGACGAAGTG CCGGAAGTCT ACTTCAATGC CGACCGGGTG
CTGCACATGG CCCAGGGCCG CATCGTCGGC ATCTATGATC CCCACCAGAC GCGGTTGGAA
GAGATAGAGG CGGCCGTCTA TGCATAG
|
|---|
| Protein sequence | MGHGSMHQSA SAARTDQPLL SLRNINMTFG GVKALKNVTF EVRPGEVHCL AGENGSGKST
LIKVITGVYR PAEGAIIEYD GDVYPHMSPV TAQERGIQVI WQDLALFPEM SVAENIAFHE
VLGRPRLVDY SRMRQIAIEA LSRLGITLDV DLPLKEYAIA QRQIVAIARA LVGEAKVVFM
DEPTASLTQS ETDYLLEIVR GLSASGVAVV FVSHRLAEVL EISSRITVLR DGALVGVYPA
DGMTQSKITE LMTGKTFDQH VRARAKDDQP VVLDVRGLGS PGQFEDVSLT VRRGETVGIT
GLLGAGRTEL ALALFGMLKP TSGTFSIDGR EARFASNRDA IKAGVAYLSE DRLSLGLIQP
QSIADNLVIA SLHKILSGGL LADDRKRSLV ARWIADLGVK IGHQADAIST LSGGNQQRVA
IAKWLATDPK LLILDSPTVG VDVGARAGIF DIVAKLAESG LAIILISDEV PEVYFNADRV
LHMAQGRIVG IYDPHQTRLE EIEAAVYA
|
|---|
| |