| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3601 |
|---|
| Symbol | araG |
|---|
| ID | 5318435 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009620 |
|---|
| Strand | + |
|---|
| Start bp | 28238 |
|---|
| End bp | 29764 |
|---|
| Gene Length | 1527 bp |
|---|
| Protein Length | 508 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640775415 |
|---|
| Product | L-arabinose transporter ATP-binding protein |
|---|
| Protein accession | YP_001312348 |
|---|
| Protein GI | 150375752 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1129] ABC-type sugar transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.611963 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGGATT TTCTAGAATT CACATCAATT TCAAAGGGCT ATCCCGGCGT TCAGGCGCTT
TCGGATGTCT CCTTTTCCGT GCGCAAGGGT GCCGTTCACG GACTGATGGG CGAAAACGGT
GCGGGGAAAT CCACCCTTAT CCGGGTGCTC TCCGGTGACC AGGCAGCCGA CACCGGTGAA
ATTCGCATCG ACGGCAGGCC GCAGCACTAT CGCTCGGTAC GCGACGCCTT CGACGCCGGC
GTCATCGTCA TTCATCAGGA ACTGCAACTC GTGCCGGAGC TGACGGTTGC CGAGAACCTC
TGGCTCGGCC GCTTTCCCGG CAGGGCCGGT GTCATCGATC GCCGGCAGCT TATCCGCGTC
GTCGGTGAAA GGCTCGCGGA GATCGGTATC GACGTCGATC CCGGGGCGAA GGTTGCATCC
TTGTCGATCG GCGAGCGCCA GATGGTAGAG ATTGCCAAGG CGGTGATGCT CGACGCCCGC
GTCATTGCTC TCGACGAGCC GACATCGTCG CTCTCCTCGA GAGAAAGCGA GATCCTGTTC
TCGCTGATCG ACAGGTTGCG GTCGAACGGT ACCGTCATTC TGTACGTTTC GCATCGCCTC
GACGAGATTT TCCGCCTGTG CGACAGTCTG ACCGTTCTCA GGGACGGGCG GCTTGCGGCC
CATCATCCGG ACGTTTCGAA AGTGACCCGC GATCAGATCA TCGCCGAGAT GGTCGGGCGC
GAGATTTCCA ACATCTGGGG TTGGCGCGCC CGTCCTCTCG GAGACGCAAG GCTGACGGTC
GAAGGCGTGT CCGGCGCCGC CCTGCCACAC CCGATCAGTT TTACCGCGCG CAGCGGCGAG
ATTCTCGGCT TTTTCGGGCT GATCGGCGCG GGCCGCAGCG AAATGGCCCG CCTGGTCTAT
GGCGCCGACA GCCGACGGCA GGGCACAGTC CTGGTGGACG GCGTTGCCGT ACGGGCCGAC
AGTCCCCCGC ATTCGATCCG CGCCGGCATC GTTCTCTGCC CGGAAGACCG GAAATTCGAC
GGCATCGTCC ACGGGAGATC CATCGAAGAG AACATGGCGA TCTCCTCCCG TCGCCATTTC
TCTCGCTTCG GCATTCTCGA CCGCGGCAAG GAAGCGGAAC TTGCGGAGCG GTTCATCGCG
AGGCTGCGCG TGCGCACGCC CTCCCGCCAC CAGGACATCG TCAATCTCTC CGGCGGAAAC
CAGCAGAAGG TGATTCTTGG ACGCTGGTTG TCGGAAGAGG GCGTCAAGGT GCTGCTGATC
GACGAGCCGA CCCGCGGCAT CGACGTTGGC GCGAAGTCGG AAATCTACGA AATCCTTTAC
GAGCTTGCAG CGCAAGGCAT GGCGATCGTC GTCATCTCCA GCGAATTGCC GGAAGTGATG
GGCATTGCGG ATCGCATTCT GGTGATGTGC GAAGGCCGCA TCGCGGCAGA AATTGCAAGG
GAAGACTTCG ACGAGCACCG GATTCTCACA GCCGCGCTTC CGGATGCCTC CGCCACAAAA
GCTCCCATTT CCGAACAGGT ACGCTAA
|
|---|
| Protein sequence | MQDFLEFTSI SKGYPGVQAL SDVSFSVRKG AVHGLMGENG AGKSTLIRVL SGDQAADTGE
IRIDGRPQHY RSVRDAFDAG VIVIHQELQL VPELTVAENL WLGRFPGRAG VIDRRQLIRV
VGERLAEIGI DVDPGAKVAS LSIGERQMVE IAKAVMLDAR VIALDEPTSS LSSRESEILF
SLIDRLRSNG TVILYVSHRL DEIFRLCDSL TVLRDGRLAA HHPDVSKVTR DQIIAEMVGR
EISNIWGWRA RPLGDARLTV EGVSGAALPH PISFTARSGE ILGFFGLIGA GRSEMARLVY
GADSRRQGTV LVDGVAVRAD SPPHSIRAGI VLCPEDRKFD GIVHGRSIEE NMAISSRRHF
SRFGILDRGK EAELAERFIA RLRVRTPSRH QDIVNLSGGN QQKVILGRWL SEEGVKVLLI
DEPTRGIDVG AKSEIYEILY ELAAQGMAIV VISSELPEVM GIADRILVMC EGRIAAEIAR
EDFDEHRILT AALPDASATK APISEQVR
|
|---|
| |