| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3586 |
|---|
| Symbol | |
|---|
| ID | 5318577 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009620 |
|---|
| Strand | - |
|---|
| Start bp | 13478 |
|---|
| End bp | 15187 |
|---|
| Gene Length | 1710 bp |
|---|
| Protein Length | 569 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640775401 |
|---|
| Product | SMP-30/gluconolaconase/LRE domain-containing protein |
|---|
| Protein accession | YP_001312334 |
|---|
| Protein GI | 150375738 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1414] Transcriptional regulator
[COG3386] Gluconolactonase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.63579 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACGACA AGGCAGTCTT AGGCGGGCTT GAAGATCGCG GGGCACCGGC GGGTGCGGCC
GCCCTCGCCA AGGGTCTCGC TCTCCTCGAC CTCATAGCGG AGGCTCCGAA GCCGCTGCGC
TTCGCTGACC TGCAGAAGAT GAGCGGCGTG CCGAAGCCGA CGCTTGCGCG CATGCTGAAG
ACGCTGATGG TGTTTCGTCT GATCCGGCAG GACGAGGCAA CGGGCGCTTA TCTGCTCGGA
CACCGCTTCA TCGAGCTTTC GCACCGTGTG TGGGATAAAT TCGACCTCGT CAGCGCCGCC
GCCCCCGAAC TCGAACGCCT TTCGGCCGAA CTCGGGGAAA CGGTCGCACT TTGCCGCCTC
GACGGTCACC GTGTGGTTTA TCTGGAAGAG CGCTCGAGCG GCGGCCTGGG CGTGCTGATT
GCGGTCGGCC GGCGTGTGCC GGTCCACTGC ACCGCGGCCG GCAAGGCTCT GCTCGCGTTT
CAGGAGCCCT CCTTCGCCCG CTCGCTTGCT GGACAGCTCG ATTATGATCG CTTCACGCCG
CAGACCATTA CAGATCCGCA GGCGCTCGAG GCCGATCTCG TCCTGACACG CGCCCGGGGC
TATGCCGTTT CCTACGAGGA GCATCTCGCA GGGGTCAATA CTGTCGCTGC TCCGATCGCC
GGGCGCGACG GAGTGCCGCT CGGAGCGCTC GTGGTGCTGG GGCCAGCCTC CCGTCTCGAC
AGTTCCGCCA TCCATCCGGT CGGCCGCGAA TTGATGGCTG CGGCGCGACG GATCACCGGC
ACGGTCGGGG CCGTGGCCAT CAGCTCCGGC CCGCGGCCGC GGACGCGTGC GGGAGGACAG
AGCGATGTGC AATGCGTTCT GCCCTGGGGC GCCCAGCTCG GCGAAGCCCC AGTCTGGGTC
GGCAGGGAAA AGCGGCTCTA TTGGGTTGAT ATTCTCCACC CGGCCGTGCA TCGGTTCGAT
CCTGTTACCG GCAAAAACGA GACCTGCAAC ACAGCCAAGC TCGTCAGTGC CGTCCTTCCG
AGCGAGGACG GGCGGCTGGT CGTCGCCTCG CAGGACGGCG TCGAACGTTT CGACTTCGAG
CGCGGCCTGT TCACCCGGTT TGCCGAGCCG GAACCGGGGG TACCGGAAAA CCGCCTCAAT
GACGCAAAAG TCGACCCGCA TGGAAGGCTT TGGGTGGGAT CGATGCGCCT TGATGTGAGC
CGGCCGACCG GCAGCCTGTA TCGCCTGACG AAGACCGGTG AAGTCGCCCG CGCCGAAAGC
GGGTTCACGG TCGCCAACGG GCTGGCCTGG AGTCCCGATA GTTCGACCTT CTACTTCGTC
GATACGGTGC CGGGCATCAT CTATGCCTAC GACTTCGATG CGAGGGAGGG GAGCATCGCC
AACCGCCGCG TTTTCGTTAC CGTGCCCGAG GCGGAGGGGC GTCCGGACGG GCTTGCCGTC
GATGCCGATG GCGGCGTCTG GTGTGCAATC TGGGATGGAT GGCGCGTGAA CCGCTATCGG
CCCGATGGCC GGCTGGATCG CGCCGTCGAA CTGCCGGTGC CACGCCCCAC CAGCGTGGCC
TTCGGCGGGG ACGATCTTGC GACCTTGTTC ATCACCAGCG CGCGCACCCG TCTCCCGGCC
TCGACGCTGA CGGAAGCACC GCTCTCCGGC GGCATTTTCG CCTGTAACCC CGGTGAGCGC
GGCCTGGCCA CCTCTCTCTT CGGCGTCTGA
|
|---|
| Protein sequence | MDDKAVLGGL EDRGAPAGAA ALAKGLALLD LIAEAPKPLR FADLQKMSGV PKPTLARMLK
TLMVFRLIRQ DEATGAYLLG HRFIELSHRV WDKFDLVSAA APELERLSAE LGETVALCRL
DGHRVVYLEE RSSGGLGVLI AVGRRVPVHC TAAGKALLAF QEPSFARSLA GQLDYDRFTP
QTITDPQALE ADLVLTRARG YAVSYEEHLA GVNTVAAPIA GRDGVPLGAL VVLGPASRLD
SSAIHPVGRE LMAAARRITG TVGAVAISSG PRPRTRAGGQ SDVQCVLPWG AQLGEAPVWV
GREKRLYWVD ILHPAVHRFD PVTGKNETCN TAKLVSAVLP SEDGRLVVAS QDGVERFDFE
RGLFTRFAEP EPGVPENRLN DAKVDPHGRL WVGSMRLDVS RPTGSLYRLT KTGEVARAES
GFTVANGLAW SPDSSTFYFV DTVPGIIYAY DFDAREGSIA NRRVFVTVPE AEGRPDGLAV
DADGGVWCAI WDGWRVNRYR PDGRLDRAVE LPVPRPTSVA FGGDDLATLF ITSARTRLPA
STLTEAPLSG GIFACNPGER GLATSLFGV
|
|---|
| |