| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmel_1909 |
|---|
| Symbol | thyX |
|---|
| ID | 5297546 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermosipho melanesiensis BI429 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009616 |
|---|
| Strand | - |
|---|
| Start bp | 1894336 |
|---|
| End bp | 1895025 |
|---|
| Gene Length | 690 bp |
|---|
| Protein Length | 229 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 31% |
|---|
| IMG OID | 640770175 |
|---|
| Product | FAD-dependent thymidylate synthase |
|---|
| Protein accession | YP_001307126 |
|---|
| Protein GI | 150021772 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG1351] Predicted alternative thymidylate synthase |
|---|
| TIGRFAM ID | [TIGR02170] thymidylate synthase, flavin-dependent |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGAGTTTA AAGTATTAGA TAAGGGATTT TTGAGGTTAG TTGATATTTT AGGAGATGAT
TATTCAGCAG TAAAAGCTGC AAGGGTTTCT TATGGAAAGG GTATTAAAAC ACCTGAAAAG
GATAAAAATT TGATTTTTTA TCTTATGGAG CATAAACATG AAACCCCTTT TGAGCATATT
GTTTTTACTT TTCATGTTAA GACGCCTATT TTTGTTGCAA GACAATGGTT TAGACATAGA
ATTGGTTCTT TTAATGAAGC AAGTTTGAGA TATACAGAGT TAAAAGATGA GTTTTATTTA
CCTGATCATA TTAGAAAAAA CATAGTTGAG GATAAGCAGA AAGCGGTACG AGTTGAAGAG
CTCAAACTAA AAGAACAAGC CTTAGAATTG ATATATAATT CAATTGAAGA TTCGTACAAA
GTTTACCGTA AATTGTTGGA GTTAGGAGTT GCCAGAGAAA TGGCAAGAAT AGTGCTTCCT
ATGTCCTCAT ATACACAGTT TTATTGGACT GTTAATGCAA GAAGTTTAAT GAATTTTTTA
AATTTGAGAG CAGATTCTCA TGCGCAATGG GAAATTCAAC AGTATGCAAT AAAAATTGCA
AAGATTTTTA AAGAAAAATG TCCTTGGACT TTTGAATCAT TTTTGAAGTT TAATTATAGA
GGGGATATTT TAAGAGAGGT GGAATTGTGA
|
|---|
| Protein sequence | MEFKVLDKGF LRLVDILGDD YSAVKAARVS YGKGIKTPEK DKNLIFYLME HKHETPFEHI
VFTFHVKTPI FVARQWFRHR IGSFNEASLR YTELKDEFYL PDHIRKNIVE DKQKAVRVEE
LKLKEQALEL IYNSIEDSYK VYRKLLELGV AREMARIVLP MSSYTQFYWT VNARSLMNFL
NLRADSHAQW EIQQYAIKIA KIFKEKCPWT FESFLKFNYR GDILREVEL
|
|---|
| |