Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tmel_1905 |
Symbol | |
ID | 5297537 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thermosipho melanesiensis BI429 |
Kingdom | Bacteria |
Replicon accession | NC_009616 |
Strand | - |
Start bp | 1891340 |
End bp | 1892773 |
Gene Length | 1434 bp |
Protein Length | 477 aa |
Translation table | 11 |
GC content | 35% |
IMG OID | 640770171 |
Product | protein-export membrane protein SecD |
Protein accession | YP_001307122 |
Protein GI | 150021768 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGGAAA ATAAAGTCAG AGGAATAATA ACTTTGGTAG TAATTGCACT TGCCTTCTTA TCTTTACTTT GGCCATCTTC AAAAGGTTAT CAAGGTGTTT TAAGTATTTT TAACAGGATA AAATTGGGTT TGGATATTAG TGGTGGTGCA AGAATAGAGT ACAGAGTTGA CATTGATAAG TCTGTAGAAA ATCCTTCTAA AGTTGCGGAA GATGTATGGA CTGTTTTGAG AAATAGACTT GATATGGCTA ATTATACAGA AGCAGTGGTT AAGCAAACTT TTAGAGAAGA AAATACTTTT ATTATAGTTG AAATTCCAGG GGCAACTGAT ACTGCGCAAG CAGAGCAATT AATTGGTTCT ACGGGGTTGC TTTGGTTTGG GCAAGTTGTA GATGAAACAA CGGGAAATCC CAATATAGAT CCTGAATTAG TAAATGAAGC CAAAAGGGAG AAAGCACAAT GGTTGCTTGA TAGAGAAGGA AAGAAATGGT ATCTAGTAAA AAAAGAAATT GCAAATATTT CAAATTTAAA ACTTGTCTCT CCAAAAATTG TTGAAGCAAT ACCACAAGTT GATAGGAATA ATGTAGCTGG TTATGTTGTA ACATTCAAAA TGGATAAAGA ATACGTTGAT ATTTTCAGGA GGATAACGGA AAAACTTTAT GTTCCTGAAG AGCTTTTAAA TCAAGGGGGA GTGGCTTATT CCCAAGCAAT GAAAAAAAGA TTGGCAATTG TCTTGGATAA TAGAGTGCAA TTTGCAGGTT TTGTTACGGC AAAGATTACA GATGGGAGTG CATTGATAAA AGGGAATTTT ACGTTGGATG AAGCAAAGCA ATTAGCGGCT ATTTTGAAGA GTGGAGCTCT TCCAGCAAGG CTTGAAAAGG TCTCATCTGG ATGGGTAGCA CCATTGCTTG GAAAAGATAT AATTGAAGCT TCAATAAAAG CTGGAATTGT TGGAGTTGTA ATAGTTTTGA TTTATATGAT TGTATTTTAT GGTGTTATGG GAATTGTTGC AGATATTGCT TTGTTGTATA ATACATTTTT GTTGTTAGGT GTACTTGCTA CAACTGGTTC CATATTGACA TTACCAGGTA TTGCAGGTAT TATTTTGACA ATTGGTACAA CTGTTGACGG AAATATCATT ATATACGAAA GAATTAAAGA AGAAATTAGA AGAGGTAGTT CGGTAAAAGC TGCAATTTCC ACGGCATTTT CAAAATCGTT TATTACGCTT TTTGACGCTA ATCTTACAAC TATAATTGCG GGTCTTTTCT TATATTACTT TGGAACGGGA ACAGTCAAAG GTTTTGCAAT TACATTGATT ATAGGTGTTT TGGGTAGTTT ATTTGTCAAT TTAGTTGTTT CAAGATTTTT CTTAGATTTA TTCTCATCTG GAATTAAGGT TAGGAGAACA AGCAAGGGAG GTGCCAGGGC ATGA
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Protein sequence | MKENKVRGII TLVVIALAFL SLLWPSSKGY QGVLSIFNRI KLGLDISGGA RIEYRVDIDK SVENPSKVAE DVWTVLRNRL DMANYTEAVV KQTFREENTF IIVEIPGATD TAQAEQLIGS TGLLWFGQVV DETTGNPNID PELVNEAKRE KAQWLLDREG KKWYLVKKEI ANISNLKLVS PKIVEAIPQV DRNNVAGYVV TFKMDKEYVD IFRRITEKLY VPEELLNQGG VAYSQAMKKR LAIVLDNRVQ FAGFVTAKIT DGSALIKGNF TLDEAKQLAA ILKSGALPAR LEKVSSGWVA PLLGKDIIEA SIKAGIVGVV IVLIYMIVFY GVMGIVADIA LLYNTFLLLG VLATTGSILT LPGIAGIILT IGTTVDGNII IYERIKEEIR RGSSVKAAIS TAFSKSFITL FDANLTTIIA GLFLYYFGTG TVKGFAITLI IGVLGSLFVN LVVSRFFLDL FSSGIKVRRT SKGGARA
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