Gene Tmel_1807 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTmel_1807 
Symbol 
ID5296748 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermosipho melanesiensis BI429 
KingdomBacteria 
Replicon accessionNC_009616 
Strand+ 
Start bp1790669 
End bp1791646 
Gene Length978 bp 
Protein Length325 aa 
Translation table11 
GC content31% 
IMG OID640770075 
ProductABC transporter periplasmic-binding protein 
Protein accessionYP_001307027 
Protein GI150021673 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG4143] ABC-type thiamine transport system, periplasmic component 
TIGRFAM ID[TIGR01254] ABC transporter periplasmic binding protein, thiB subfamily 


Plasmid Coverage information

Num covering plasmid clones4 
Plasmid unclonability p-value0.000832712 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAAAA TTATAGTACT ATTAATCTTG TTAATTAGTG CTTTCTACTT TTCAACTCAA 
ACATTAGTTG TATACACATA TGACAGTTTT GTATCAGGCA TTGGTTATGA AGTAGTGCCT 
ATATTTGAAA AAATGTATGG TTGTAAAGTG GATTTAAGAT CATTTGGTGA TGCTGGTTCA 
GTCCTTTCTA GATTAATCCT TGAAAAGCAG AACCCAAAGG CAGATGTAAT TATAGGGCTT 
GATCAAGCTT TATTGTTTCG TGCAATTAAA GAAAACTTAC TTGAAAAATA CACGCCAATA 
AACAAATCAC TTCTAAAATA TCCAGAATTA TTAAATGAAT ACGGTGTTCC ATACGATTTT 
GGAGCAATTG CAATAGTATA CAATAGAAAC ACAGTAAAAA ATCCACCAAA GAGTTTTTCT 
GACTTGCTCA GTAAAAAATT TAAAAATCGG ATAGTAGTAC AAGATCCAAG AACTTCAAGT 
ACAGGTTTAA GTTTTTTACT TTGGACAATT GCAGTATATA AAGATAATTA CTTAGACTTT 
TGGAAGAAAT TTAAAGAAAA TATTTTAACA ATAACCCCTG GATGGGATGA AGCATTCGAA 
ATGCTTGAAT CAGGTGAAGC GGACATAATG GTAAGCTATG CAACTGATGG TGCATATAGT 
TATCACAACT ACGGTGAAAT TATCTATGTT CCTGTTATAC TCGATGACGG TGCATGTGTT 
CAAATAGAAT ATGCTTCTAT TGTAAAAGGC ACTAAAAACA TGGAACTTGC AAAAAGGTTT 
TTGGAATTTA TCCTAATGGA AGATTTCCAA GAAAAAGTAC CATTAAACCA ATGGATGCTT 
CCAGTTACAG AAGTAAATAC TCCTGAAGCC TTTAAGTATG TTCCACAAAT AAATAAGATT 
TTAAAATTAG AGCCTAAAAT CTACGAAAAA CAAGAGGAGA TATTAAAAGA ATGGTCAAAA 
GAAGTAATTG GTGGATAA
 
Protein sequence
MKKIIVLLIL LISAFYFSTQ TLVVYTYDSF VSGIGYEVVP IFEKMYGCKV DLRSFGDAGS 
VLSRLILEKQ NPKADVIIGL DQALLFRAIK ENLLEKYTPI NKSLLKYPEL LNEYGVPYDF 
GAIAIVYNRN TVKNPPKSFS DLLSKKFKNR IVVQDPRTSS TGLSFLLWTI AVYKDNYLDF 
WKKFKENILT ITPGWDEAFE MLESGEADIM VSYATDGAYS YHNYGEIIYV PVILDDGACV 
QIEYASIVKG TKNMELAKRF LEFILMEDFQ EKVPLNQWML PVTEVNTPEA FKYVPQINKI 
LKLEPKIYEK QEEILKEWSK EVIGG