| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmel_1802 |
|---|
| Symbol | trmD |
|---|
| ID | 5297030 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermosipho melanesiensis BI429 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009616 |
|---|
| Strand | - |
|---|
| Start bp | 1787210 |
|---|
| End bp | 1787950 |
|---|
| Gene Length | 741 bp |
|---|
| Protein Length | 246 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 32% |
|---|
| IMG OID | 640770070 |
|---|
| Product | tRNA (guanine-N(1)-)-methyltransferase |
|---|
| Protein accession | YP_001307022 |
|---|
| Protein GI | 150021668 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0336] tRNA-(guanine-N1)-methyltransferase |
|---|
| TIGRFAM ID | [TIGR00088] tRNA (guanine-N1)-methyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0021221 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAGAATAA GTATTTTGAC AATATTTCCT GAAATGGTAG AGATTGTAAA AAAATATGGA
GTAATTTCTA GGGCAATAAA AAATGGTATT TTGGAAATTG AAATATTTAA TTTAAGAGAT
TTTACAAATG ATAAGCATAA AACAGTTGAT GATTATCCAT TTGGTGGTGG GCCTGGTATG
GTAATGAAAC CAGAGCCGTT TTTTAATTTT TTTGAGTATT ATAAAGAAAG ATATGGAAAT
ACATATACTA TACTTACTTC TCCCCAGGGG GATAGATTAA CCAACCATTT GGTAAAAGAA
TTAAGTGAAA AAGAAAGTAT TTTAATAATT TGTGGTAGAT ATGAAGGAAT AGATGAGAGG
GTTACAAAAT TTGTTGATAG GGAGATTTCC ATAGGGGATT ATGTGTTGAC AGGTGGAGAA
TTACCGGCGA TGGTCATAGT GGATGCCGTT TCAAGGTTTA TACCAGATGT AATTGATAAA
AAGTCAGTAG AACAAGAAAC TTTTAACACA GGCTTACTTG ATCATCCGCA CTATACTAGG
CCAAGAAATT ATAAAGGTTT AGAAGTTCCA GAAGTGCTTT TAAGTGGTGA TCATAAAAAA
ATTGAGATTT GGAGACGTAA AATGGCTTTG AAGAAAACCA TGTTAAAAAG GCCAGATCTC
TTTTTGAACA AGGATTTAGA TGGAGTTGAT AAAGTTGCGT TGCTTGATTT ATTTAGGGAG
TTGATTAATA ATGCTAAGTA A
|
|---|
| Protein sequence | MRISILTIFP EMVEIVKKYG VISRAIKNGI LEIEIFNLRD FTNDKHKTVD DYPFGGGPGM
VMKPEPFFNF FEYYKERYGN TYTILTSPQG DRLTNHLVKE LSEKESILII CGRYEGIDER
VTKFVDREIS IGDYVLTGGE LPAMVIVDAV SRFIPDVIDK KSVEQETFNT GLLDHPHYTR
PRNYKGLEVP EVLLSGDHKK IEIWRRKMAL KKTMLKRPDL FLNKDLDGVD KVALLDLFRE
LINNAK
|
|---|
| |