Gene Tmel_1674 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTmel_1674 
Symbol 
ID5298255 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermosipho melanesiensis BI429 
KingdomBacteria 
Replicon accessionNC_009616 
Strand
Start bp1662198 
End bp1663259 
Gene Length1062 bp 
Protein Length353 aa 
Translation table11 
GC content26% 
IMG OID640769950 
ProductCRISPR-associated RAMP Csm5 family protein 
Protein accessionYP_001306902 
Protein GI150021548 
COG category[L] Replication, recombination and repair 
COG ID[COG1332] Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) 
TIGRFAM ID[TIGR01899] CRISPR-associated RAMP protein, Csm5 family 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.901558 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATATATG AAGTTGAAGT TTTAACCCCC TTAGCAATAA ATAATGGAAA TGAAATTAAA 
AGCTTTGAAA TTATACGTGA GGGTGGAAAA TCGTATATTT TAGATTTCAA CAAACTTTTT
GAAAATGAAA ATTTTGTTGA ATTAGTTGTT AATTCTCCAC AAATTCTATC AGATGAAGAT
TCATTAAAAA AAGCTTTTAA ATTTTTGAAA CTTGATTATA AGAAGTATAC TAAGATGGTT
TTAAACTATC CTTTAGACAA AAGGTATAAC ATTAAGGAAT TTATTAAAAC AATTGGGAAA
CCCTTTTTAC CAGGTTCATC CTTAAAAGGT GCCATAAGAA CAGCATTGAT TAGAGGTAAT
AATTTTGAAG AACATTACAA AAAAAGCCTT AATTTTCTCA ATAAAAGTAA AGGTAGAAAT
ATAAATAAAA AACATTTCGA TGATTTTGTT GAAAAAAAAT TATTTGGTGA TTCATATGAA
TCTCCTTTTA GGTTTTTAAG GATTTCTGAT GGTTATGTGG TTTCAAATCA TGATTTAAAA
ATTGTTCCCA TTGAAGTTTT AAATTTAAAG AAAAAAAGGC GAGTGCTTCC ATATATTTAT
ACAGAAGCAT TAAATCTCCA CACAAAGATA AGAGGAAATA TAGATTTTGG ATTTTTAGAA
GCAATAAAAA ATAGTGAATT TAAAGATAAT TTCAAAAACT TGCAAATTGT CGAAGATTTT
GTCAAAAAGG TGAATAATGG TGTGAAAAGG TACATAAATG ATGAAATTGA TTTGTTGAAA
GGTAATTTAA AAGAATTAGA GACTTTTTAT TCAACTTTAT TAAAAAGAAT GAACAATTTG
AAAGATAATC AATTCATTGT ACAAATAGGT TTTTCAACGG GTTATTATTC TAAAACAGTT
GTTGGAAAAC TTGATTCAAA TCAAATAAAG TTAATGAAAA TAAAAAGGTT ATTATACAAA
AAAGTTAAAC CTGAATTTTT CCCAGTAACT AGAAGAGTAG TAAGACGAAA TGGAGTGATG
GAACCATTAG GATGGATTTT GGTGACGTTA AAAGAGGAGT GA
 
Protein sequence
MIYEVEVLTP LAINNGNEIK SFEIIREGGK SYILDFNKLF ENENFVELVV NSPQILSDED 
SLKKAFKFLK LDYKKYTKMV LNYPLDKRYN IKEFIKTIGK PFLPGSSLKG AIRTALIRGN
NFEEHYKKSL NFLNKSKGRN INKKHFDDFV EKKLFGDSYE SPFRFLRISD GYVVSNHDLK
IVPIEVLNLK KKRRVLPYIY TEALNLHTKI RGNIDFGFLE AIKNSEFKDN FKNLQIVEDF
VKKVNNGVKR YINDEIDLLK GNLKELETFY STLLKRMNNL KDNQFIVQIG FSTGYYSKTV
VGKLDSNQIK LMKIKRLLYK KVKPEFFPVT RRVVRRNGVM EPLGWILVTL KEE