| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmel_1580 |
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| Symbol | |
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| ID | 5297507 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermosipho melanesiensis BI429 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009616 |
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| Strand | + |
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| Start bp | 1568430 |
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| End bp | 1569857 |
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| Gene Length | 1428 bp |
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| Protein Length | 475 aa |
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| Translation table | 11 |
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| GC content | 31% |
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| IMG OID | 640769857 |
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| Product | alpha amylase, catalytic region |
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| Protein accession | YP_001306809 |
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| Protein GI | 150021455 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0569736 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGGTTTC CCATCCCATC TTGGGTTTAT GATACAGTTA TATACCAAAT CTTTCCCGAT
AGGTTCTTTA TAGGAAAAGG TTTAACGGTA GAAGAAAAAA AGCAGTTGTA TGAAAAAAGA
GGTGGAAGAG TAGAAAAATG GGGAGTTCCA CCAAAAAGAG ATGAAAAAAA CGATCATGTA
AGGGTATTTT ATGGAGGAGA TTTGTGGGGA ATAGCGGAAA AAATAGAATA TTTAAGAGAT
TTAGGTGTTA ATGCGATTTA TCTAACACCT ATATTTTTAT CAAATTCAAA TCATAAATAC
GATACTATTG ATTATTTTAA GGTTGATCCG CAATTTGGTG GCATACGTGC TTTAAAAAGA
TTAATAAATT CTCTGCATGC GGAAAATATG AAGTTGATTT TGGATGGTGT GTTCAATCAT
GTTGGAAGAG AAAATGTTTA TTTTAAAAAG GCTTTAAAGG GAAAAAATAA ATATAGAAAT
ATGTTTATTT TTTATGAAAA CAACTACAGA GGTTGGTGGG GAACAAAGAG CCTTCCTGAG
TTAGTTTTAG AAGAAGTATC GGTGAAAAAT TACGTAATAG ATGTTTTAAT AAAGTATTTA
GAGTTGGGAA TTGATGGTTG GAGGTTAGAT TGTGGCCAAG ATTTGGGGCC AGAGTTTAAT
AGATACATTA CATCAAAGGT AAAAGAATAT TCTTCAGAAA AATATGTGAT AAGTGAGTTG
TGGACATATA CTGGCGGTTG GGATATGGTT GATGGTATTA TGAATTATCA TCTAAGAGAA
AATATAGTTT CATATATTGA AGGTACTAAT AAAAACTTTG GGTTTTATCT TGAACGTATG
TATAATGAGA CGGACAATAT ATTGGCTTGC TGGAATATGC TAGATAGTCA TGATACGGAA
AGACTTGCAA CAACTATAAA TGACAAATTT TTGAGAAAAT TCGCCATTTT TATGCAGTTT
ACTTATCCAG GTGTACCTGT AATTTATTAT GGTACTGAAG TAGGTATAAA TGGTGGGCCT
GATCCAGAAT GTCGTAAGAC AATGATATGG AATGAAGAAA AATGGGATAA TGATTTAAGG
GATTTTTACA AAAAACTTAT TTATTTAAGA AAAAATGAGC CTGCTTTAAG ATATGGTTCT
TTTGAATTGT TAAATAATGA TCCTATAGTA TTTATGAGAA GGACTCCAAT GGTTTTGGAT
ACTTTGATAG TATATGGAAA TATTTATGAT GAACCTTTAG ATATTACAAT ATCTATTCCA
GAAAAAAGAT TGTTAAGTGG AACGGAGTTT ATTGATATGT TTACAGAAGA TAGGTATTTT
ATAAAAGGTG GAATGTTAAA AATAAAGATG TTACCACATT CTTTTGGAAT ACTTAAGGTG
AAAAACAACA TAGTAAACAA CTATGATCAG TATAAAAGGA TAAGTTAG
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| Protein sequence | MRFPIPSWVY DTVIYQIFPD RFFIGKGLTV EEKKQLYEKR GGRVEKWGVP PKRDEKNDHV
RVFYGGDLWG IAEKIEYLRD LGVNAIYLTP IFLSNSNHKY DTIDYFKVDP QFGGIRALKR
LINSLHAENM KLILDGVFNH VGRENVYFKK ALKGKNKYRN MFIFYENNYR GWWGTKSLPE
LVLEEVSVKN YVIDVLIKYL ELGIDGWRLD CGQDLGPEFN RYITSKVKEY SSEKYVISEL
WTYTGGWDMV DGIMNYHLRE NIVSYIEGTN KNFGFYLERM YNETDNILAC WNMLDSHDTE
RLATTINDKF LRKFAIFMQF TYPGVPVIYY GTEVGINGGP DPECRKTMIW NEEKWDNDLR
DFYKKLIYLR KNEPALRYGS FELLNNDPIV FMRRTPMVLD TLIVYGNIYD EPLDITISIP
EKRLLSGTEF IDMFTEDRYF IKGGMLKIKM LPHSFGILKV KNNIVNNYDQ YKRIS
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