Gene Tmel_1559 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTmel_1559 
Symbol 
ID5297081 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermosipho melanesiensis BI429 
KingdomBacteria 
Replicon accessionNC_009616 
Strand+ 
Start bp1546769 
End bp1547788 
Gene Length1020 bp 
Protein Length339 aa 
Translation table11 
GC content30% 
IMG OID640769836 
ProducttRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 
Protein accessionYP_001306789 
Protein GI150021435 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0482] Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain 
TIGRFAM ID[TIGR00420] tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGAAAAAAA AGGGATATGC TGTAACAGCA TATCATTTAA AAACGGTTCC AGATTCGTTA 
TATTTAACTA AACAGATCAA ACACAAGGTT TGTTGTAGTC CATCGGACAC ATTTGATGCC 
AAAAAAGTTG CACAAAAGTT TGGGGTAGAA CTAAAAATAA TACATGTGGA GAATGTTTTT 
AGGGAAACTA TAATTAAGTA TTTTATTAAT GAGTATAAAA GAGGAAGAAC TCCAAACCCT 
TGTTTTTTTT GTAATGATTG GATAAAGTTT GGAGTTTTGC TTGAGAGAAT AATCCAAGAT 
GGAAACGATT ATGTGGCCTC TGGTCATTAC GCGCTTTTAA GGGATGGAAA ATTGTATAAA 
GCAAAAAATA AAGAGAAAGA TCAATCGTAT TTTTTGGCAT CTATAAAAAG GGAAAAATTA 
GGTTACTTAG TTTTTCCGAA TGGAGAATAT AACAAAGATG AAATTAGAAA TATTGCAAAA 
GATTTGAATA TTCACATACA TTCAAAGGAA GATTCTCAAG ATTTATGTTT TATTCCCGAT 
AATAATATTT ATGGATTTTT AAAGGAAAAT GGAGTAGGGT TCAAGGAAGG GTTAATAATT 
GATACTAAAG GAAACATTTT GGGAACACAT AAAGGATTGT CAAATTATAC TATCGGTCAA 
AGGAAAATAG GTATAGCTGT AAGGGAACGT ATGTATGTGT TAAGAAAAGA TTTTGAAAAG 
AATTTACTTG TTGTTGGGAA AAAAGGAGAG GTGTTTAACA ATAAGTTTAC AGTATCGAAA 
CTGAATTTTT TGCAAGATGT ATATAAAAAG ATAGAAGGAT ATGTTAAAGT AAGAAAAAAA 
TTCAAAGAAG TAAAATGTAG GGTATATGTA GATAATGATA ATTTGTATGT GGAAACAAGA 
GAGCCTATTT TTGCTATTAC TCCAGGGCAA ATAGCGGTTA TTTATGATGA AGATGGAGCA 
GTAATTGTAT CAGGGGTTAT AGAAAAGGAG GGATGGAATG GATTTGAAAG TTTTAATTGA
 
Protein sequence
MKKKGYAVTA YHLKTVPDSL YLTKQIKHKV CCSPSDTFDA KKVAQKFGVE LKIIHVENVF 
RETIIKYFIN EYKRGRTPNP CFFCNDWIKF GVLLERIIQD GNDYVASGHY ALLRDGKLYK 
AKNKEKDQSY FLASIKREKL GYLVFPNGEY NKDEIRNIAK DLNIHIHSKE DSQDLCFIPD 
NNIYGFLKEN GVGFKEGLII DTKGNILGTH KGLSNYTIGQ RKIGIAVRER MYVLRKDFEK 
NLLVVGKKGE VFNNKFTVSK LNFLQDVYKK IEGYVKVRKK FKEVKCRVYV DNDNLYVETR 
EPIFAITPGQ IAVIYDEDGA VIVSGVIEKE GWNGFESFN