| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmel_1528 |
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| Symbol | |
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| ID | 5296819 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermosipho melanesiensis BI429 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009616 |
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| Strand | + |
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| Start bp | 1516099 |
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| End bp | 1520118 |
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| Gene Length | 4020 bp |
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| Protein Length | 1339 aa |
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| Translation table | 11 |
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| GC content | 28% |
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| IMG OID | 640769805 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001306758 |
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| Protein GI | 150021404 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.646539 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATATAG TAAAATTTTT TAGAAACACT TACAATGGAC CTGAATACAT TGTAGATGTT
GATGGCAATT TAAAAAGAAT GAAAATATTG GACAAAAAAT CGATTGGAAG TTTTTTGGAA
TTATCCAATT ACTTTAATTT GGTGAATTAT ATAAGCACTT TTTTAAAGCC TGAAAGGTAT
GAAATTGAAA CTGAAAAAGC AGTGCTATAT TTTTCGTATA GTGGTGAAGA ATCTGTAAAA
TTGGAAGATC TTTCGTTGGA TTTAAAAAAA GAACTTTCTG TTTTATTGTT AAATTTGGTC
CAAGAAATTT ATCATATTCC AAATTTGTAT TTTCCAGTTT TTTCTGTTGA TGATATTTTA
ATAAAAGGTA ATTCATTTGT TATTCAACCA CCTATTTGGA CAAAAAAGAA AGAGATACCT
GATAGTAAAG AAAATTTATT TATTGCCCCA GAGTTTATAA AGAAAAAGGA AATAAATGAA
AAATCTTCAA TTTATGTTAT TGGGAAGGTA ATTGAAAAAT TAGGAATATA TGAATTAAAA
AGAATAGTTG AAGAAATGGT GGTTGAAGAT TTTACAAAAA GAAGTGTTCA TTTTGCAATG
CCCAGTGTTT TTAAAAGTTT TTTAGAACTA AACTTTGTCG TTCCAACTAT TCAACGACCT
GAACTTAATG AATTAATGAA TGTTTTAAAT TTAAGAGAAT CAGTTTTTAT TGGTGTGGTT
GGAGAACAAA GAATGGGTAA AACTACTTTG TTAAATCTAC TCCAAGAAAG GCTTGTATCG
GAGGGAAAAC TTGTAATTAG GGCTACAGGT ATAGCTCAAT TTGTTTTGCA ACTATTACAA
ATTGCCGCGG GAAAGGCAGA TGAGGATATT TTAAGCCAGA TAGAAAATAT TATTAATAAT
GGTGGAAAAG TGGATACCTT AGTTCCACTA GTTGGAAGTG TTATTGATGA TTTGGAGCAA
TTATTTGTAT TAGTGGATGA TTACCAAGAG AAATTTGACA ATTTTAAAGT GTTTCTAAAA
GAGCTATTTT CACTGAATTT TAAAGTTAAA CATAAAGTTG TTGCATTTTC CACTGAAAAA
TTTAGTGATT TTGATAAAGT TATTTATTTA AAACCGTTTA GTAAAGGTCA AATTGAGGAA
TTGTTGACAA AAACATTTTT TAATCTGGAA AGAAAAGAAG TTTTTAGTGA TTTTCTATAC
AAAGTTAGTA ATGGATATCC TGGTATTTTA GTTGAGGTTT TAAGGACATT AGTAGAAAAA
GGCTTATTGA GAAAAAATGT TGAGAAAGAT TCTTGGGAAT GTGAATTAGA GAAATTAGGA
GATTTTGATT TTGAGAATAT TTTTGATGTT TTTGATGGGT TGAATAAGGA ATATTTTGAA
AAGTTGAAGT ATTTATCAGT ACTTGGGCAA AAATTTACGG ATGATGAGAT AGAACTTTTG
GAAGGTGTAA TTGGCTGGAG TTTTTCAGAT ATAATTAAGG TGGCAGAGAA TAAAGGTATA
TTGTATAGAG AATATTCAAA TTTGAGGTTT ACGTTGAGAC AATATTGGGA AAGATTATAC
GATACTGTAG AAAATAAAAA GCAATTGCAT AAAAAACTTA TATGCCAGTA TTTAAAACTT
GATTTTTTTG GAGTTTATCA GAAAGTTGCA TGGCATTTTA GAATGATTGG GGATGAGAGG
AAAGCTTTGA TATATTATTT GAAATCTATT AAGAGAGGTT TGGAAAAATA TTACTCTCCC
AACATTTTGC GGGAAATGAT TGCTGAAGCT GAAAAATTGC TTCCAAAAAA TAAATATTTA
TATTCACTGA TAAGATATAA AGTTGAGATT TATTATAGAG TGTTTAGGGA GATAGATTTT
GAGATTCCGG ATAAAAAGAT ATTTGAGTAT TGGAAAATTG CAGCAAAATA TGTTAATCAA
AAAAACAAAG AAGTAGTTGA ATTTTTTGAA AAGGATAAAG ATAGGTTAAA AGGTTTTGGA
AAATTTGGTA CATATAGAAG GGTTTTACTC TATTATTATG CCTTATTTAA TTTGAGGATG
TATGAAAAAA TCGATATTTT AACTTTGGAA AAAATTTCTA AGATCCCTGA AGTTGAATCT
AAATTTGTTT TAGAGTTAAA AGTTAGAGCG CTGATTTTAC TTGGAAGTAT AATTTCTAAT
AGAGATAGGG TTCTAGCAGA ACATTATTAT GAAGAGGCCA AAACTATTGC GAAAGAAAAG
GGGTTATTTC ATTTTCTGCC TACTATTTAT AATAATTTAT CTATTAATAT TGGTAATTTA
GTTATTGCAA ATCAATTATA TGATAAAGCG ATTTATTATT CTGAAATAAT TGGTTTAACT
AATTTATCAA TCACTTCAAA AATAAATAAA ATTCAAAGTA TGCTTTATAT GGGTGATATA
AATAAATTTT TTGTGGAGCT TTTAAAGCTT CGTAGAATTT TGGAATTGAA AGATTTAAAA
TTTGAACTAG CAGAGACTTA TAAATTAGAA GCGTTGTATC ATGTTTATAA TAGGGAATTT
GAAGATGGTT TGAAAGATAT AATGGTTGCA AGAAATATTT TGGAAAAATT ACAGTTGGGA
AGTTCATATT TGCGGTTATT GTTTTTACTT TACGTATTTA CGGAAAAAAT AAACTATGTA
AGGAATATGT ACAATGAAAA TAAAGATGCT AGAGATTTGA AAGATTGGGG ATTTAGCTAT
TTTGTTAAGT TAGTTTTTGC GGAGAATGAT GAAGATTTTA GAAAAATATG GGAAGAATAT
AGAGATTCTG AGGTTTTTTT ATGGCGAGAA GAGATCTTTG CAATTTTTGG TGAAAAGATT
GCAAAGGTTG ATCCAGAGGG CTTTTTTGAA CAACTTAGAT TTTTTGAAAA AAATTACGCA
ACTCAGGGTT TGAAATTATC ACTTGCAATG TTATATGAAG GTTTTGCAAA GTACTATAAA
ACATTAGGAA AAGATTACAG ATACGGTTTG TATATTTCAA AGGCTTATTC TCTGTATAGA
GAGATGGGAT TTGAAAATTA TGTGGAAATT TTGGAAAAGA AAGAGATTTT TAAAATGAAT
CCATACTTTA AGAAATCTTT GGATTTGACA AAGGTGTATG ATAATAAGAA CTTGTCGAAA
GAGTTGCGGG ACTATTTTTC AAAGACAAGT TTTGCAATGG GAATATTAGA AGAATTGAAA
GCGATAGAAG AAATAGAAGA ACCTCAAAAT ATTGTTAACT ACTTTGCAAG TAAAATTTTA
CAGATCTTAC CCGTAAATGG AATAGAGATA TTTGTTAAAG ATGTACAAAT TGGTCAAGAT
TTCAAATTTT CAAGTGTGGA AAACGTTGAA AGAAGAGATT TAATAGAAAA AAACCCTTTA
AGGGTTAAAA TTTCAGATAA AATTGACAAA TATTTAGATT ATTATATATA TATTTCAAAT
GAAAAACTAA ATATAGATGA TGAGGAATTG TCAAATATAT TGGAAATATT AAAAATTGTA
GAATTTGGAT TTATTACTGC TATAAAATCT TCTTTATTAA GATTGAGGAG TTTTTTGGAT
CCACTTACAA AGTTGTATAC CAGATATTAT TTTGCGGAAA AGATAGATGA ATATTTTGAA
AAAGCGAAAA AATTTAAGGA AAGACTTTCT ATTATTATGT GCGACTTGGA TCATTTTAAA
AAGATAAATG ACAAATATGG TCACCTACTT GGAGATGAAG TTTTAAGAGA GATTGCAAAA
ATTTTGAAAG AAAATGTAAG AAGAAACAAC GATATAGTCG GAAGATATGG TGGAGAGGAG
TTTATAATAC TACTTCCAAA TTCTTCTTTA AATTATGCAA AAGAAATTGC AGAAAGATTG
AGAAAGAAGA TAGAAGCTAT TGATAAATTT CCTTTTAAAG TTACAATGAG TTTTGGTATA
GCAAGTTATC CAGAAGTTTT GGTTAAAACT TCTGATGAAT TGGTTGGTTA TGCAGATGAT
GCTTTGTATA AAGCAAAAGA ACTTGGAAGG AATAGGGTGA TTGTTTTTGA AGTTAATTGA
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| Protein sequence | MNIVKFFRNT YNGPEYIVDV DGNLKRMKIL DKKSIGSFLE LSNYFNLVNY ISTFLKPERY
EIETEKAVLY FSYSGEESVK LEDLSLDLKK ELSVLLLNLV QEIYHIPNLY FPVFSVDDIL
IKGNSFVIQP PIWTKKKEIP DSKENLFIAP EFIKKKEINE KSSIYVIGKV IEKLGIYELK
RIVEEMVVED FTKRSVHFAM PSVFKSFLEL NFVVPTIQRP ELNELMNVLN LRESVFIGVV
GEQRMGKTTL LNLLQERLVS EGKLVIRATG IAQFVLQLLQ IAAGKADEDI LSQIENIINN
GGKVDTLVPL VGSVIDDLEQ LFVLVDDYQE KFDNFKVFLK ELFSLNFKVK HKVVAFSTEK
FSDFDKVIYL KPFSKGQIEE LLTKTFFNLE RKEVFSDFLY KVSNGYPGIL VEVLRTLVEK
GLLRKNVEKD SWECELEKLG DFDFENIFDV FDGLNKEYFE KLKYLSVLGQ KFTDDEIELL
EGVIGWSFSD IIKVAENKGI LYREYSNLRF TLRQYWERLY DTVENKKQLH KKLICQYLKL
DFFGVYQKVA WHFRMIGDER KALIYYLKSI KRGLEKYYSP NILREMIAEA EKLLPKNKYL
YSLIRYKVEI YYRVFREIDF EIPDKKIFEY WKIAAKYVNQ KNKEVVEFFE KDKDRLKGFG
KFGTYRRVLL YYYALFNLRM YEKIDILTLE KISKIPEVES KFVLELKVRA LILLGSIISN
RDRVLAEHYY EEAKTIAKEK GLFHFLPTIY NNLSINIGNL VIANQLYDKA IYYSEIIGLT
NLSITSKINK IQSMLYMGDI NKFFVELLKL RRILELKDLK FELAETYKLE ALYHVYNREF
EDGLKDIMVA RNILEKLQLG SSYLRLLFLL YVFTEKINYV RNMYNENKDA RDLKDWGFSY
FVKLVFAEND EDFRKIWEEY RDSEVFLWRE EIFAIFGEKI AKVDPEGFFE QLRFFEKNYA
TQGLKLSLAM LYEGFAKYYK TLGKDYRYGL YISKAYSLYR EMGFENYVEI LEKKEIFKMN
PYFKKSLDLT KVYDNKNLSK ELRDYFSKTS FAMGILEELK AIEEIEEPQN IVNYFASKIL
QILPVNGIEI FVKDVQIGQD FKFSSVENVE RRDLIEKNPL RVKISDKIDK YLDYYIYISN
EKLNIDDEEL SNILEILKIV EFGFITAIKS SLLRLRSFLD PLTKLYTRYY FAEKIDEYFE
KAKKFKERLS IIMCDLDHFK KINDKYGHLL GDEVLREIAK ILKENVRRNN DIVGRYGGEE
FIILLPNSSL NYAKEIAERL RKKIEAIDKF PFKVTMSFGI ASYPEVLVKT SDELVGYADD
ALYKAKELGR NRVIVFEVN
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