| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmel_1511 |
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| Symbol | |
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| ID | 5296747 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermosipho melanesiensis BI429 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009616 |
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| Strand | - |
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| Start bp | 1496741 |
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| End bp | 1498729 |
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| Gene Length | 1989 bp |
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| Protein Length | 662 aa |
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| Translation table | 11 |
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| GC content | 29% |
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| IMG OID | 640769788 |
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| Product | DNA ligase, NAD-dependent |
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| Protein accession | YP_001306741 |
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| Protein GI | 150021387 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0217425 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAACA TAAAAGAGGA AATTGAAAGA TTACGAAAAG AAATAGAATA CCACAACTAC
CGATATTATG TTCTAGCAGA TCCAATAATA AGTGATGAAG AATATGACAG ATTATTAAAA
AAACTAATAG AATTAGAAAA AAAATACCCG AAATTTTCTT CTCCAAATTC CCCAACGCAA
AAGGTTGGAG GAGGAGTTAT TTCAGGATTT GAAAAAGTTG AGCATACAAC TCCAATGTTA
AGTCTTGATA ATACATACAA CGAAACAGAA ATAAAAGAAT TTGACAATAG AATAAAAAGG
CTATTAAACA GAAATTCTGT TGAATATGTT TGTGAATTAA AAATCGATGG TATCTCCGTA
TCAATAAGAT ATGAAAATGG TGAATTTCGC CAAGCAATTA GTAGAGGGAA CGGTATAATA
GGTGATGATA TTACAGAAAA TGTTAAAAAA ATTAAATCAA TTCCTCTAAG ATTATTTAAA
AAATACACAA TAGAAGTTAG AGGAGAAATT TTTATGCCCA TTAAAGAATT CGAAAAATAC
AATAAAATTG CCGAAGAAGA AGGATTGCAA CCATTTGCCA ACCCAAGAAA TGCTGCTGCT
GGAACTATTA GGCAACTGGA TTCCTCTATA GTTGCAAAAA GAAATCTAGA TTCATTTATA
TATTACATAG TAAATCCAGA AAATTACAGT TTAAAAACAC AATGGGAGGC TCTGGATTTT
TTAAAAAAAC TAGGATTTAA AGTCAATAGA CAATCAATAT TATGTAAAAA TGTTGAATGT
ATTATAGACT TTTGGAAAAA AATGACTAAA GAGAGAAAAA ATCTTGATTA TTGGATTGAT
GGACTTGTAA TCAAAGTAAA TAATTTTGAG TTTCAAAAAA TTTTAGGTGA AACATCAAAA
TCACCAAGAT GGGCAATTGC ATTTAAATTT CCAGCAATAA AGAAAAAAAC TAAGATAATA
GATGTAGAAC TTAACGTAGG AAGAAGTGGA ATAATAACCC CAGTTGCAAT TTTCGAACCC
ATAGATCTTG ATGGAACAAT TGTAAAACGT GCATCTTTAC ATAATTTTGA ATATATCCAG
GACAAAGATA TAAGAATAGG CGATTATGTT TATATAGAAA AAGCAGGTGG AATAATTCCA
CAAGTTGTAA GTGTAGTAAA AGAAAAAAGA ACAGGTTTAG AAAAAGAAAT AAAAATTCCT
AAAAGTTGTC CTGTATGTAA TGGACCAGTT GGCAAACTAA CTGAAGACGA AATCGCTATA
AGATGTCTTA ACCCTCATTG TCCTCAGAAA CTAAAAAGAC ATTTAGAAAT ATTCGTCTCA
AAATCTGCAT TCGACATTTC AGGAATAGGC GAAAAAATAA TAGATAAAAT AGTCGATGCA
AAGTTGATAA AAGATATAGC GGACATTTTT TACCTAACAC CTTTTGATTT GGCTCAAATA
AGTGGTTTGG GTCAGAAATC AATTGCAAAA ATTTTAGAAC AAATAGAAAA ATCGAAAAAA
ACACCGCTAA ATAGGGTTAT AGTTGGACTA GGTATTCCGA TGGTTGGAGA AAAAACCTCA
AAAATTCTTG CAGAAAAATT CAAAAATATT GAAAAATTGT CCTCTGCAAC GTATGATGAA
TTAATAAAGA TTGAAAATAT CGGCCCTGAA ATTGCCAAAA GTATAGTAAC TTATTTCCAA
AACGAAAAAA CAAAGGAAAT CATTAATAAA CTCAAAAAAG CTGGTGTAAA TCTTGAAGAA
AAAGATGTAA AAAAGTCCGA CAAACTTAAA GGGTTAACAT TCGCAATTAC AGGAAAACTA
AAATCATACA CAAGAGAAGA AATTAAAAAA ATAATAGAAG AAAATGGAGG AAAAGTTTCA
AATTCAGTTA GTTCAAAAAC AAACTTTTTA ATTGCAGGAG AAGAGCCTGG TTCAAAACTT
GAAAAAGCCA AAAGATTAAA TATAAAAATA ATCTCAGAAG AAGACTTTTT AAAACTCATC
AGTGGCTAA
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| Protein sequence | MKNIKEEIER LRKEIEYHNY RYYVLADPII SDEEYDRLLK KLIELEKKYP KFSSPNSPTQ
KVGGGVISGF EKVEHTTPML SLDNTYNETE IKEFDNRIKR LLNRNSVEYV CELKIDGISV
SIRYENGEFR QAISRGNGII GDDITENVKK IKSIPLRLFK KYTIEVRGEI FMPIKEFEKY
NKIAEEEGLQ PFANPRNAAA GTIRQLDSSI VAKRNLDSFI YYIVNPENYS LKTQWEALDF
LKKLGFKVNR QSILCKNVEC IIDFWKKMTK ERKNLDYWID GLVIKVNNFE FQKILGETSK
SPRWAIAFKF PAIKKKTKII DVELNVGRSG IITPVAIFEP IDLDGTIVKR ASLHNFEYIQ
DKDIRIGDYV YIEKAGGIIP QVVSVVKEKR TGLEKEIKIP KSCPVCNGPV GKLTEDEIAI
RCLNPHCPQK LKRHLEIFVS KSAFDISGIG EKIIDKIVDA KLIKDIADIF YLTPFDLAQI
SGLGQKSIAK ILEQIEKSKK TPLNRVIVGL GIPMVGEKTS KILAEKFKNI EKLSSATYDE
LIKIENIGPE IAKSIVTYFQ NEKTKEIINK LKKAGVNLEE KDVKKSDKLK GLTFAITGKL
KSYTREEIKK IIEENGGKVS NSVSSKTNFL IAGEEPGSKL EKAKRLNIKI ISEEDFLKLI
SG
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