| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmel_1378 |
|---|
| Symbol | lysS |
|---|
| ID | 5298251 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermosipho melanesiensis BI429 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009616 |
|---|
| Strand | + |
|---|
| Start bp | 1379590 |
|---|
| End bp | 1381098 |
|---|
| Gene Length | 1509 bp |
|---|
| Protein Length | 502 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 640769651 |
|---|
| Product | lysyl-tRNA synthetase |
|---|
| Protein accession | YP_001306610 |
|---|
| Protein GI | 150021256 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1190] Lysyl-tRNA synthetase (class II) |
|---|
| TIGRFAM ID | [TIGR00499] lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGTTAAGGG AGTTTAGAGA GCAAAGAATA AAAGAAATTG AACAATTAAA AAGGAAAAAC
ATAAACCCTT ATCCGAATAG ATTTGATAAA ACTCATACTA GTGAAATGAT AAAAAAGGAA
TTTGAAGGAT TAAATCCAGG AGAGGTAAAA GATGATGTGT TTGTATCAAC TGCGGGAAGA
ATAATGTCTT TAAGAAAACA TGGTAAGAGT GCATTTTTCC ACATAAAGGA TTTTTACGGT
AGGATACAAG CGTATATACG AAAAGATGTT GTTGGCGAAG AAGCTTATGA ATTTTTTAAA
GAACATATTG CAATTGGAGA TATTGTAGGT GTTAAGGGGA ATGTTTTTAA GAGTAAAACG
GGTGAAATTA CTATTTTAAT TAAAGAGATA AAGCTTTTAA ATAAGCCATT AAGACCAATG
CCTGAAAAGT GGCATGGTAT TAAGGATAAA GAGGTTTTGT ATAGGCAAAG ATATGTTGAC
ATGATAGCAA ACGATGATAC ATTAAATAGA TTTAAAGTTA GATTTGAGGT TATAAAATTG
ATAAGGGATT TTTTGAATTC AAAAGGTTTT ATAGAAGTTG AAACTCCAAT TTTGGAATAT
GTAACAGGTG GTGCTTCTGC TAGGCCCTTT GTGACTCATT TAAATGTGTT TGACATTGAA
ATGTATATGA GAATAGCTAC CGAGTTGTAT TTAAAAAGGT TTATAGTAGG TGGTTTTGAA
AAGGTTTATG AATTAGGTAA GAATTTCAGA AATGAAGGTT TGTCATATAA ACATCATCCT
GAGTTTACAT CTATAGAAAT TTATCAAGCG TATGCAGATT ATGAGGATAT GATGAACCTT
ACGGAAGAGT TGTTTGTGTA TATAGTGGAA AAGTTGTTTG GTACTACAAA GATAAAATAT
CAAAATGTAG AATTGGATTT TTCAAGACCT TGGAGAAGGA TTAAGATGAG AGACTTTATT
AAGGAACATT TAGGCGTAGA TATTTTAGAA GATTCAATGG GAAGAATGAT GGATGTGTTG
GAAGAACATG GTGTAGAAGT TGAAATAAGA GATAAGGGTC ATATGATTGA GAAACTTTGG
GATTTAGTTG AAGATAAGGT AGTTCAACCT ACTTTTTTAC TTGAACATCC TGTGGAAATT
TCACCACTTG CAAAGAAACA CAGGGAAGAT CCACGTGTTA CTGAGAGATT TGAGTTGATA
ATTTATGGCA GGGAAATGGC CAACGCATTT AGTGAGCTTA ATGATCCAGT TGATCAGTAT
GAGAGGTTTT TAAAGCAAGT AGAGCTTAGA GAAGCAGGTG ATGAAGAAGC TCAAATGATG
GATAGGGATT TTGTTAGGGC TTTGGAGTAT GGTATGCCAC CAACTGGTGG GTTAGGGATA
GGCATTGATA GGTTAGTAAT GTTACTTACA AATTCAGCTA CAATTAGGGA TGTTATAGCA
TTTCCGTTGG TAAGGCTAAA ATCTTTTGAA GAAGAAGAGC TAGATATAGA AGGGGGTTCG
CAAGAATGA
|
|---|
| Protein sequence | MLREFREQRI KEIEQLKRKN INPYPNRFDK THTSEMIKKE FEGLNPGEVK DDVFVSTAGR
IMSLRKHGKS AFFHIKDFYG RIQAYIRKDV VGEEAYEFFK EHIAIGDIVG VKGNVFKSKT
GEITILIKEI KLLNKPLRPM PEKWHGIKDK EVLYRQRYVD MIANDDTLNR FKVRFEVIKL
IRDFLNSKGF IEVETPILEY VTGGASARPF VTHLNVFDIE MYMRIATELY LKRFIVGGFE
KVYELGKNFR NEGLSYKHHP EFTSIEIYQA YADYEDMMNL TEELFVYIVE KLFGTTKIKY
QNVELDFSRP WRRIKMRDFI KEHLGVDILE DSMGRMMDVL EEHGVEVEIR DKGHMIEKLW
DLVEDKVVQP TFLLEHPVEI SPLAKKHRED PRVTERFELI IYGREMANAF SELNDPVDQY
ERFLKQVELR EAGDEEAQMM DRDFVRALEY GMPPTGGLGI GIDRLVMLLT NSATIRDVIA
FPLVRLKSFE EEELDIEGGS QE
|
|---|
| |