| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmel_1316 |
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| Symbol | |
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| ID | 5296933 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermosipho melanesiensis BI429 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009616 |
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| Strand | - |
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| Start bp | 1323074 |
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| End bp | 1325200 |
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| Gene Length | 2127 bp |
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| Protein Length | 708 aa |
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| Translation table | 11 |
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| GC content | 30% |
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| IMG OID | 640769590 |
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| Product | (p)ppGpp synthetase I, SpoT/RelA |
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| Protein accession | YP_001306550 |
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| Protein GI | 150021196 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
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| TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00230975 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATAAATA TTGAAGAATT TATAAATAAC TTGGAAACGA TTCTAAAAAA AGAATTAAAT
GAATCAGAAA TTAAGCTCCT GGAAAAAGCT ATAAAAATTG CAGAATTTGC ACATGAAGGT
TTTTACAGAA AATCAGGTGA ACCATTTATT ACGCATCCAC TAGAAGTTTC AAAGATTCTT
GCATCTTTAA ATTTAGATTT AGAAACAATT ATTACCGGAA TACTTCACGA TGTAGTAGAA
GACAGCGAAG GAAAAGTAAC ATTGGAAGAC ATTGAAAAAA ATTTTGGAAA AGAAATCGCG
TTAATAGTAG ACGGTGTAAC AAAAGTAAGC AAAATAAACG CCCCAGTTGG GAACATAGAA
CAAAAGAAAA AAAGTGAAAC TATTCAAAAA ATGTTATTCG CAATGGCTGA AGACGTTAGA
GTAATATTCG TTAAACTTGC AGATAGATTA CACAACATGC GAACTATACA TTTTGTAAAA
GATCCCAAGA AAAGAAAGTA CAAAGCCCTC GAAACACTCG AAGTTTATGC ACCCATAGCT
CATAAACTTG GAATTCATAT CATAAAATGG GAACTTGAAG ACTTATCATT TAAAGTTTTA
TATCCAAAAG AATACTACAA AATAAAAGAA TTAGTTGCAG AAAAGAAAAA AGAAAGAGAA
GAAAGAACAA ATGAATATGT TAATCAACTA AGACTTGCAC TAAAAGAACA TAACATATCC
GCAAAAGTCG AAGGAAGGTA TAAGCATTAC TATAGTATTT GGAAAAAAAT GAAAGAAAAA
AAGAAAAAAT TTGAAGAAAT TTACGACCTC ATTGGCATAC GTGCTATCGT AAATGATGTT
AATTCCTGTT ATTCTGCTAT TGGAGTAGTT CATCAAATAT GGGTACCTCT TCCTGGAAGA
TTCAAAGATT ATATAGCCGC TCCAAAATCT AACGGATACA AATCAATACA CACAACTGTA
ATAACCCAAT ACGGTGAACC ACTTGAAATT CAAATTAGAG ATGTACAAAT GCACAATGAG
GCCGAATACG GACTTATAGC TCATTGGATA TATAAAGAAA AAAACGTTAA TTTAAAGCAA
AAGTGGTTAA TACAGCTACT TGATTGGCGA AAGGAACTTT TACAGGGAAG TACAAATTTA
TCTGAATTAA AAAATGAACT TCAACTTGAT GAAGTATTTG TTCTCACACC TAAAGGAGAA
ATAATACATA TGCCTATTGG TTCCACAGTC ATTGATTTTG CATACGCAAT TCACACGGAA
ATTGGCCATC ACTTTTCAGG TGCAAAAGTA AATGGAAAAA TAGTACCAAT AGATTATAAA
CTAAAAAACG GAGATGTAGT TGAAATACTT GTAAACAAAG CAAGTAAAGG ACCAAGCTTA
AGTTGGATAA AGCATGCAAA AAGCCCAAGG ACAAAAGCTA AAATAAGAAG GTTTTTTAGA
GAAAAAGAAA AAGAAAAATT AATTGAGTCT GGAAAAGATG TAATTAGAAA ACTCGCAAAA
AGATTAAATC TTTCAATAGA AAAATTCTTT GAACTTGAAA AAATTCAAAA TTTTTTAAAA
AGTCACAATT TAACTATTGA AGAATTATAT TCTAGAATCG GTGAAGGAAG TATCACCTTT
ACCGATCTTC TTTCGATTAT TGAAAAAAAA CAAGAAAAAC AAGAAAAAAA ATCAAGAAAA
AAATCATCAA ATTTAAAAAA TGTTGTAGTA ATTGATGGAA TAACAAATTT AGATGTTCAC
ATCGCAAAAT GTTGTATGCC AGTTCCAGGA GATGAAATTG TAGGGGTCTC AAGTAGACGT
GGTATAACTG TTCACAGAAT AAATTGTAAA AATATTAGAA ACATAGATGA AGATAGAATA
TTCCAAGCTA GATGGGCAAA AAACGATGAA AATGGGTTTA CAACTATGTT AGAAATTGAG
TTTGATAAAA ATGATAGACT TCCAGAAATA ATGAATTTAT TAATATCTAA CAAAATAAAC
GTTACAAGTT TCAAACTCAC TGAATCAAAA AATTGGAATA CGGTATTTGC AAATATAACA
ATTGTGGTAA AATCATTAAG TGAAATTCAT AATATAAAAA AAGAGTTGGA AAAAAAGGCT
GGAATATTGA GGGTGAAAAG AAAATGA
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| Protein sequence | MINIEEFINN LETILKKELN ESEIKLLEKA IKIAEFAHEG FYRKSGEPFI THPLEVSKIL
ASLNLDLETI ITGILHDVVE DSEGKVTLED IEKNFGKEIA LIVDGVTKVS KINAPVGNIE
QKKKSETIQK MLFAMAEDVR VIFVKLADRL HNMRTIHFVK DPKKRKYKAL ETLEVYAPIA
HKLGIHIIKW ELEDLSFKVL YPKEYYKIKE LVAEKKKERE ERTNEYVNQL RLALKEHNIS
AKVEGRYKHY YSIWKKMKEK KKKFEEIYDL IGIRAIVNDV NSCYSAIGVV HQIWVPLPGR
FKDYIAAPKS NGYKSIHTTV ITQYGEPLEI QIRDVQMHNE AEYGLIAHWI YKEKNVNLKQ
KWLIQLLDWR KELLQGSTNL SELKNELQLD EVFVLTPKGE IIHMPIGSTV IDFAYAIHTE
IGHHFSGAKV NGKIVPIDYK LKNGDVVEIL VNKASKGPSL SWIKHAKSPR TKAKIRRFFR
EKEKEKLIES GKDVIRKLAK RLNLSIEKFF ELEKIQNFLK SHNLTIEELY SRIGEGSITF
TDLLSIIEKK QEKQEKKSRK KSSNLKNVVV IDGITNLDVH IAKCCMPVPG DEIVGVSSRR
GITVHRINCK NIRNIDEDRI FQARWAKNDE NGFTTMLEIE FDKNDRLPEI MNLLISNKIN
VTSFKLTESK NWNTVFANIT IVVKSLSEIH NIKKELEKKA GILRVKRK
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