| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmel_1279 |
|---|
| Symbol | |
|---|
| ID | 5297306 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermosipho melanesiensis BI429 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009616 |
|---|
| Strand | + |
|---|
| Start bp | 1287756 |
|---|
| End bp | 1288433 |
|---|
| Gene Length | 678 bp |
|---|
| Protein Length | 225 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 640769553 |
|---|
| Product | undecaprenyl diphosphate synthase |
|---|
| Protein accession | YP_001306513 |
|---|
| Protein GI | 150021159 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0020] Undecaprenyl pyrophosphate synthase |
|---|
| TIGRFAM ID | [TIGR00055] undecaprenyl diphosphate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTAAAAC ATATAGCCTT TATAATGGAT GGTAATGGTA GATGGGCTCA GAAAAGGAAT
AAGCCTAGGA TGTATGGGCA TTATGTAGGA GCGTATAAAA TAGAGGAGGT TGTAAGATGG
TGTGCGAAAC GTGGTGTAAA ATACACCACG TTTTATGCTT TTTCAACGGA AAATTGGAAA
AGACCGAAGG GAGAAGTAAA TTTTATATTT GGTTTACTTC AAAGTAAAAT TTCGGAGTTT
TATGAGCGAA TGAATAAAGA AGGGGTAAAG CTTGTTTTTT CTGGACGATT GGAGGAGCTG
GGGAAAAATA TTTACAATAT TTGTAAGGAA TATGAAGAAA AGACAAAAAA TAACGAAAAA
ATAGTTGTTA ATATGGCTAT TAACTATGGC GGAAGAGCGG AAATAGTAGA TGCGGTAAAA
AAATTTTTAG AGCAGAGGCA AAAAGAAATA GATGAGGAAA CTTTTAGAAA ATTTCTGTAT
AGACCAGAAG TACCTGATCC TGATTTGATA ATAAGAACTT CGGGTGAAAT GAGATTAAGT
AACTTTCTAA CATGGCAATC TGCATATAGT GAGCTTTATT TTACAGATGT TTTATGGCCT
GATTTTTCAG AGGATGATTT ACAAAAAGCT TTGGAAGATT ATGAAAAAAG AAACAGAAAA
TTTGGGGGGA TAAAGTGA
|
|---|
| Protein sequence | MLKHIAFIMD GNGRWAQKRN KPRMYGHYVG AYKIEEVVRW CAKRGVKYTT FYAFSTENWK
RPKGEVNFIF GLLQSKISEF YERMNKEGVK LVFSGRLEEL GKNIYNICKE YEEKTKNNEK
IVVNMAINYG GRAEIVDAVK KFLEQRQKEI DEETFRKFLY RPEVPDPDLI IRTSGEMRLS
NFLTWQSAYS ELYFTDVLWP DFSEDDLQKA LEDYEKRNRK FGGIK
|
|---|
| |