| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmel_1187 |
|---|
| Symbol | |
|---|
| ID | 5296561 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermosipho melanesiensis BI429 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009616 |
|---|
| Strand | - |
|---|
| Start bp | 1205352 |
|---|
| End bp | 1207256 |
|---|
| Gene Length | 1905 bp |
|---|
| Protein Length | 634 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 32% |
|---|
| IMG OID | 640769464 |
|---|
| Product | methionyl-tRNA synthetase |
|---|
| Protein accession | YP_001306426 |
|---|
| Protein GI | 150021072 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[R] General function prediction only |
|---|
| COG ID | [COG0073] EMAP domain
[COG0143] Methionyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00398] methionyl-tRNA synthetase
[TIGR00399] methionyl-tRNA synthetase C-terminal region/beta chain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.00127744 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAAAAAAT TTTATTTGAC AACCCCTATA TACTATGTTA ATTCGGAACC TCACATTGGA
AGCGCATACA CAACTATTAT TGGGGATATA ATAGCAAGAT ACAAAAGGCT CATAGGATAT
GACGTCTTTT ATTTAACAGG TACTGATGAA CATGGTCAAA AAATAATGCA AGCTGCCAAA
AAAAGGGAAA TTGAGCCAAA ACAGCTCTGT GATGAACTTT CAGAAAAATT CTCACAACTT
TGGAAGGATC TCAAAATAAC AAACGATTAT TTTATAAGAA CAACAGATCC TAAGCATATG
AAAACCGTTC AACTTTTTGT CTCAAAGATG CTTGAAAACG GAGATATTTA CAAAGGAATA
TACAAAGGAT GGTATTGTAT TCCTTGTGAA ACATATTGGA ATGAAGATGA AACAGAACAA
ATAGAAGGAA AACATATCTG TCCCACTTGT GGAAGGGAAC TAAATTTTGT TGAAGAGGAA
AATTATTTTT TTAGACTTTC AAAATACACA GAACCATTAT TAAAACATTT TAAAGAAAAT
CCCGATTTTG TGGAACCAGA TTTTAGAAGA AATGAAATGT TGAAAATACT CGAAAGTGGT
TTAAAAGATC TTTCAATCAC CAGAACAACA TTTGACTGGG GAATTCCAAT GCCAAACGAT
CCCAATCACG TCATATATGT ATGGGTTGAT GCATTAATAA ACTACATATC GGCGATTGGT
TATGGCTCTG ACCAAGAAAA ATTCGAAAAG TGGTGGCCTG CTGATTTACA TTTAATTGGA
AAAGAAATAA ATAGATTTCA CAGTCTTATC TGGCCTGCTA TGTTAATGTC CGTGGGGTTA
CCTTTACCTA AAAAAATATT TGCTCATGGA TGGCTTACCG TCAATGGACA AAAGATAAGT
AAATCCTTAG GTAACGCCAT TGATCCTAGA GAATTTGTTA AAAAGTATGG CAATGATGTA
GTAAGATATT ATCTTGCAAG AGACATAGTT TTTGGAAAAG ATGGAGATTT CTCCGAAGAA
AACCTAGTCC ATAGGTTAAA TTCGGATCTT GCAAACGATT ATGGTAATTT ACTACATAGA
ACCATAGCTA TGGTTGTAAA AAACTTTGAT TCGATAATTC CAGAACCAAA TAACATTCAG
GAAATTGACG AAAAGTTAAT CAAAGAGTAT TTTGAAGTAA AAGAAAAATA CCTAGAATAC
ATGGAAAGTT ATAAACTAAC AAATGCACTC GAAACCATTT GGGAATATAT AAGGTATATT
AACAAGTACT TTGATGAAAA CAAACCATGG GTATTAGCAA AAGAAGGTAA CAAAGGAAGA
CTATCAACAG TTTTATACAA TACCCTTGAA GCTTTCTTAA AGGTTGCAAC TTTATTAATA
CCATTTATGC CGTACTCTTC TGAAGAGGTA TTCAACAGAC TTGGTCAAGA AAGAAATTTC
CAAAAAATAC TAAACGAATG GAATACAATA AAACCAACTA CTAAAGCTGT TCACGGAAAA
CCTTTGTTTA ACAAAATAGA TTTAAAAAAG TTTGAAAAGA TAGCTGTAAA AAAGGAAGAA
AAAAAAGAAG AACATGGTGT ACTTATTTCA ATAGACGACT TTAAAAAACT TGACCTTAGA
ACAGCTAAAA TAATAGAAGC ACAAAAAATT GAAAAATCTG AAAAACTTTT GAAATTAATA
GTCGATTTAG GCAAACTTGG CAAACGCCAA ATAGTTGCTG GAATTGCAAA ATTTTATTCA
CCAGAAGAAC TCATAGGCAA AAAAATTGTA GTTGTATACA ATCTAAAACC CGCAAAATTA
ATGGGAATAG AATCGCAAGG AATGTTACTT GCCGCGAAAA TTAACGACAA ACTTTCGATA
TTAACAGTAG ATAAAGATAT AGAACCAGGC GCTAAAATTT CATAA
|
|---|
| Protein sequence | MKKFYLTTPI YYVNSEPHIG SAYTTIIGDI IARYKRLIGY DVFYLTGTDE HGQKIMQAAK
KREIEPKQLC DELSEKFSQL WKDLKITNDY FIRTTDPKHM KTVQLFVSKM LENGDIYKGI
YKGWYCIPCE TYWNEDETEQ IEGKHICPTC GRELNFVEEE NYFFRLSKYT EPLLKHFKEN
PDFVEPDFRR NEMLKILESG LKDLSITRTT FDWGIPMPND PNHVIYVWVD ALINYISAIG
YGSDQEKFEK WWPADLHLIG KEINRFHSLI WPAMLMSVGL PLPKKIFAHG WLTVNGQKIS
KSLGNAIDPR EFVKKYGNDV VRYYLARDIV FGKDGDFSEE NLVHRLNSDL ANDYGNLLHR
TIAMVVKNFD SIIPEPNNIQ EIDEKLIKEY FEVKEKYLEY MESYKLTNAL ETIWEYIRYI
NKYFDENKPW VLAKEGNKGR LSTVLYNTLE AFLKVATLLI PFMPYSSEEV FNRLGQERNF
QKILNEWNTI KPTTKAVHGK PLFNKIDLKK FEKIAVKKEE KKEEHGVLIS IDDFKKLDLR
TAKIIEAQKI EKSEKLLKLI VDLGKLGKRQ IVAGIAKFYS PEELIGKKIV VVYNLKPAKL
MGIESQGMLL AAKINDKLSI LTVDKDIEPG AKIS
|
|---|
| |