Gene Tmel_1164 details

Gene Information

• Locus tag: Tmel_1164
• ID: 5297126
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thermosipho melanesiensis BI429
• Kingdom: Bacteria
• Replicon accession: NC_009616
• Strand: +
• Start bp: 1186502
• End bp: 1187056
• Gene Length: 555 bp
• Protein Length: 184 aa
• Translation table: 11
• GC content: 29%
• IMG OID: 640769442
• Product: TetR family transcriptional regulator
• Protein accession: YP_001306404
• Protein GI: 150021050
• COG category: [K] Transcription
• COG ID: [COG1309] Transcriptional regulator

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 0.00000872016
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACAAGAA GAAATACAAG GGAGATAATA TTAAAAGCTG CAAAAGAAGC GTTTTCCAAA 
AAAGGATATG ATGCGGTTAG TATAGATGAG ATTGCACAAA TTGCAGGTGT GCGAAAATCT 
TTGATTTATT ATTATTTCCC TAGTAAAGAG GCGCTTTTTG AAGAAGTGTG GATTAATTCT 
ATTGAAGAAT TGGAAAATGA GTTGTTTAAC AGTGAAAAAG ATGAACCTAC GTATATTACA 
AAAATAAAGA GTTTTTTGAG AAAGTATATA GATTTTTTAA CTAGTAAAAA AGAAATAGCG 
GATTTATTGA GAAAAGAAAA AGCAAAAGTT CTTGACAAAA AAGATTGGGA AAATGCAAAG 
AGTAAGTATG AAAACTTTTT GCAAAGAGTG GAAGAATTAA TAATTGAAGG AAAAAACAAG 
AAGGTTATTA AAGAAGAAGT AGATCCAAAA GCAGTAACTG AGATGATAGC TAGTGTTGAT 
TCTGTGCCGA GAAAGACATT ACTAAAATCT GTTGAGGAAA TGTTAATAAA AATTTTACTT 
AAAGATAATA CGTAG 

 

Protein sequence

MTRRNTREII LKAAKEAFSK KGYDAVSIDE IAQIAGVRKS LIYYYFPSKE ALFEEVWINS 
IEELENELFN SEKDEPTYIT KIKSFLRKYI DFLTSKKEIA DLLRKEKAKV LDKKDWENAK 
SKYENFLQRV EELIIEGKNK KVIKEEVDPK AVTEMIASVD SVPRKTLLKS VEEMLIKILL 
KDNT