| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmel_1039 |
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| Symbol | polC |
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| ID | 5297113 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermosipho melanesiensis BI429 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009616 |
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| Strand | + |
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| Start bp | 1065570 |
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| End bp | 1069658 |
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| Gene Length | 4089 bp |
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| Protein Length | 1362 aa |
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| Translation table | 11 |
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| GC content | 34% |
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| IMG OID | 640769323 |
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| Product | DNA polymerase III PolC |
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| Protein accession | YP_001306285 |
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| Protein GI | 150020931 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG2176] DNA polymerase III, alpha subunit (gram-positive type) |
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| TIGRFAM ID | [TIGR00573] exonuclease, DNA polymerase III, epsilon subunit family
[TIGR01405] DNA polymerase III, alpha chain, Gram-positive type |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.195059 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATATG TTTTTGAGAA ATTAGCTTTT CCCGTTTCAA GGTTTTATGA GTATTTTAAT
ATAGAAGTAT CTGGGGAAAT AACAAAGATT GTTTATGAAC CTTCTAACAG GGTTTTAACT
TTCCACGTGA AAAAGGCTTT TGGAGACTTT AACAGGTTGA AAGAAAAGTT AAAAGTGTTT
TTTGGGGTTA ATGTGGAGAT AGAGTATGAG GTAACAGAGT TAGAAAGAGA AGAGATTTTG
GGAATTTTAA ACGGAACGGC TCCTTATGTA AAAGACGTAG AGATATTTGA GAATGAGATA
TTGATAAGAA CATTTGGTGA ATTTGCCAAA AAAAAGATAG AAAAGGAAAT AAACCATATA
GAGAAGGTTA CGGGGAAAAC GGTAAAAGTG GAAATTGTTG AGGAAACATT TAAAATTGAA
CCTCCGAAAA TAGAAAATAA TTTAAAGAAA TTTGATGAAG ATAAAAAGTA TTATTTCCCA
TCGAATATAC CGTTGAATGC GAAAAGGGTA TTTTTGAGGG GAAAGGTTTT TAAATTGGAA
CAACAATATG GAGTTTTTTC TGTATACATT ACGGATAGAA AAGAGTCTAT TTTGGGAAAG
ATTTTTGATA ATGCAAATGA ATTTAGTACG TTAATAAAAG AGGGAAATTG GTATTATTTT
AAGGGTTCAA TGGGTGTTGA CAAAAGAGGA GGATATTATT TTGCAATAAA TGATGTATTT
AAAGATCCAA GTCCCATAGA AAGAAAAGAT ACCTATGAAG AAAAAAGAGT AGAATTACAT
ATTCATTCAA AGATGAGTGA TTTAGATGCA ATCGTGGATA TAAAGGAAGT AGTGCGAAAG
GTTAAAGAGT GGGGGTGGAG TGCAGTTGCA ATAACAGATC ATGGAAATGT TCAATCCATT
CCTTATTTGT TTGAAGAAGC GGAAAAGAAT GGTATTAAGC CTATTTTTGG TACGGAAATG
TATGTTTTAA ACGAAATGGG GGATATAGTA AAGAATTTGG TTGAAGACAA AATGTTAGAT
GATGTAACGT ATACGGTGTT TGACCTTGAA ACAACAGGGA CAAACGCAAA ATTCGACGAG
ATTATAGAAA TTGGTGCGGT AAAGTACAGA GACGGTAAGG TTATTAATAC CTTTTCAAGC
TTTGTAAAAC CTACAAAGAG TATATCGGAA TTTACCCAAA AACTTACGGG AATTACAGAT
GAAATGGTAA AAGATGCAAA ATCTATAGAA GAGGTTTTCC CGGAATTTTT GAAATTTATT
GATGGGACCG TTTTAGTTGC ACATAATGCC GATTTTGACT ATGGGTTTAT TAGGGAGGTT
AATAGAAGGT TATACAATAA AGAACTTGAT TTTGCTTATC TTGATACCTT GAAACTTTCC
AAAGTACTAC TTAGAGGGAA GGTAAAATCC TTTGGGCTTG GAAAACTTGT GGAATATTTT
AAGTTAGGGC CTTTTAAACA TCATAGGGCG TTTGAAGATG CAAGTGTAAC TGCCGATTTG
TTTGGAAAAT TGTTGGAGCT ACTTTTAAAA AGAGGTATAA AGACATTGGG GCAGGTTAAT
AATTTGAAGA ATACTTCATC AATCTCCACC ATTCGCACTA AAAAACAATT TAATCATATT
ACAATTTTAG TAAGGGATAA GGTAGGATTA AAAAATCTCT ATAAATTAGT TTCAGATGCA
CATGTAAAGT ATTTTAAATA TGTTCCTTTT GTTCCGAAAA AGGAGTTAAT AAAATACAGA
GAAGGTCTTT TATTGGGTAC CGGTTGTGAA AGCGGAGAAA TCTTTCAAGC GTTAACGGGT
TCTTCAACGG ATGAAGAAAT TTTAGAAATG TTAAAAGATT ACGATTACGT GGAGATTTTT
CCCTTGGATA CTATTGTTAG TGTTGAAAGA GAAGTTGCAA AGCAGGTATA TAAAAGGTTG
TATGAACTTG CAAAGAGACT AGATTTACCG GTGGTTATGG TAAGTAATGC ACATTTTTTG
GAACCTGAGG ATATAAAGGC AAGGCATGTA CTTCTTTCGC CCATTGAAAA GAGTAATCCA
CACGATGATG ATTTAAGGGA TAAAGACGCA AAGTTATACC TTAGAACTAC TGATGAAATG
ATGAAAGAGG CTTTTGAGAT TTTTGAAGAT GAGAAAATTG CGTATGAAAT TGTTGTGGAG
AATACAAATA AAATAGCTAA TAATATGATA GAGGATGTAA AACCTATAAA GAGAAAATTG
CATCCTCCAA TAATTGAAGG TGCAGACGAA AAGGTAAGAT CGTTGTCAAT TAAACGTGCT
AAAGAGTTGT ATGGTGATCC ACTACCTGAT GTTATTGAAA AAAGGTTGGA GAAAGAGTTG
GAGAGTATAA TAGGACATGG TTATGCTGTG TTGTATGAGA TAGCACACCT TATTGTGAAA
AAAGCAAATG AGGATGGATA CGTGGTTGGT TCACGTGGAT CTGTAGGTTC TTCGTTTGTT
GCATATCTTA TGGGAATTAC AGAAGTAAAT CCTTTACCAC CACATTATCT ATGCCCGAAA
TGTAAGTATT TAGAGTTTTC AAAAGATATG GGTTCAGGAT ACGATTTGCC CAACAAGCTT
TGTCCTAAGT GTGGAACAAA GCTTGAAAAG ACAGGGCAAG ACATTCCATT TGAAGTTTTT
ATGGGATTTA AAGGTGATAA GGTGCCGGAT ATTGATTTGA ATTTTTCAGG TGAATATCAA
GAAAGGGCAC ATAGCTATAT AGTTGAACTT TTTGGTAAAG ATAATGTTTT AAGGGCAGGG
ACTATTAGTA CCATAGCAGA AAAAAGTGCA ATAGGGTACG TGAAAAGTTA TATGGAAGTT
AAAGGTGAAA CATTACATCA GGCAGAACAG ATTAGGTTGG CGGAAATGGT TGCTGGGGTA
AAAAGAACAA CTGGACAACA TCCAGGCGGA TTGATGATTG TACCAAAAGA TATGACGGTA
TATGATTTTA CCCCTATCCA GTACCCTGCC AACAAAAAAG ACTCTGAAAT GTGTACAACC
CATTTTGCTT ACGAATCAAT CCACGATGAT TTGGTGAAAT TAGATGCGCT TGGACATGAT
GACCCTACTA TGTTGAAACT TTTGTACGAG TATACAGGAG TAGATCCAAC TAAGGTTCCC
ATGGATGATA AAAAGACGTT GGAGATATTC TCCTCTTTAA AACCTTTAAA GGTAAAAGCC
GAGGAGCTTG GCATAGATGT TGGAACTATA GGTATTCCTG AGTTTGGAAC GAATTTTGTC
CAGGAAATGT TAAAAGAAAC AAGGCCAAAG ACGTTTGCGG AATTAGTTAG AATTTCCGGA
CTTTCACACG GTACAGATGT TTGGTTAAAT AACGCGCAAG ATATAATTAA GTCAGGAAAC
GCCACACTTT CGGAAGTTAT ATCTTGTCGT GATGATATTA TGATATACCT TATCAATGCA
GGTGTGGAAG AATCTCGCGC ATTTAAGATA ATGGAAAACG TTAGAAAGGG AAAGGGCATT
TCAGAAGATG ATGAAAAGTT GATGAGAGAA AAAAACGTTC CTGAATGGTT TATACAATCT
TGTAAAAAAA TAAAATATCT TTTCCCTAAA GCACACGCAG TTGCATATGT TAGTATGGCA
TTTAGAATAG CGTACTTTAA GGTTCATTAT CCCCTTGCCT ATTATGCGGC GTATTTTTCA
ATAAAGGGAG ATGAATTTTC CATTGAAACT ATTTTAAGGG GTATAAAATC TATAAAGAAA
AAATTGGCGG AGTTAAATGC TCAAATGAAA AAAGACGTTA AAGAAAAGAA CGAAGAAAAG
GTACTTGAGG CGGCTCTTGA AATGTACTTA AGAGGTTATT CTTTCTTGCC TCCTGATATA
TTAAAAAGTG ATTATAGAAG GTTTATAATA GAGGGCAATG AATTAAGAAT ACCACTTAAC
AAAATACCAG GTGTAGGGGA TAATGTGGCG TTATCAATTA TTCAAGCAAG AATGGAAAAG
CCATTTACAT CTATTGATGA TTTAAAAAAA CGTACTAAGT TGAGTAAAGC ACACATTAAT
ACAATGAGAA AGTTAAGGAT TTTAGAAGAC CTTCCAGAAA CGGATCAATC CACACTATTT
GATTTTTAA
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| Protein sequence | MKYVFEKLAF PVSRFYEYFN IEVSGEITKI VYEPSNRVLT FHVKKAFGDF NRLKEKLKVF
FGVNVEIEYE VTELEREEIL GILNGTAPYV KDVEIFENEI LIRTFGEFAK KKIEKEINHI
EKVTGKTVKV EIVEETFKIE PPKIENNLKK FDEDKKYYFP SNIPLNAKRV FLRGKVFKLE
QQYGVFSVYI TDRKESILGK IFDNANEFST LIKEGNWYYF KGSMGVDKRG GYYFAINDVF
KDPSPIERKD TYEEKRVELH IHSKMSDLDA IVDIKEVVRK VKEWGWSAVA ITDHGNVQSI
PYLFEEAEKN GIKPIFGTEM YVLNEMGDIV KNLVEDKMLD DVTYTVFDLE TTGTNAKFDE
IIEIGAVKYR DGKVINTFSS FVKPTKSISE FTQKLTGITD EMVKDAKSIE EVFPEFLKFI
DGTVLVAHNA DFDYGFIREV NRRLYNKELD FAYLDTLKLS KVLLRGKVKS FGLGKLVEYF
KLGPFKHHRA FEDASVTADL FGKLLELLLK RGIKTLGQVN NLKNTSSIST IRTKKQFNHI
TILVRDKVGL KNLYKLVSDA HVKYFKYVPF VPKKELIKYR EGLLLGTGCE SGEIFQALTG
SSTDEEILEM LKDYDYVEIF PLDTIVSVER EVAKQVYKRL YELAKRLDLP VVMVSNAHFL
EPEDIKARHV LLSPIEKSNP HDDDLRDKDA KLYLRTTDEM MKEAFEIFED EKIAYEIVVE
NTNKIANNMI EDVKPIKRKL HPPIIEGADE KVRSLSIKRA KELYGDPLPD VIEKRLEKEL
ESIIGHGYAV LYEIAHLIVK KANEDGYVVG SRGSVGSSFV AYLMGITEVN PLPPHYLCPK
CKYLEFSKDM GSGYDLPNKL CPKCGTKLEK TGQDIPFEVF MGFKGDKVPD IDLNFSGEYQ
ERAHSYIVEL FGKDNVLRAG TISTIAEKSA IGYVKSYMEV KGETLHQAEQ IRLAEMVAGV
KRTTGQHPGG LMIVPKDMTV YDFTPIQYPA NKKDSEMCTT HFAYESIHDD LVKLDALGHD
DPTMLKLLYE YTGVDPTKVP MDDKKTLEIF SSLKPLKVKA EELGIDVGTI GIPEFGTNFV
QEMLKETRPK TFAELVRISG LSHGTDVWLN NAQDIIKSGN ATLSEVISCR DDIMIYLINA
GVEESRAFKI MENVRKGKGI SEDDEKLMRE KNVPEWFIQS CKKIKYLFPK AHAVAYVSMA
FRIAYFKVHY PLAYYAAYFS IKGDEFSIET ILRGIKSIKK KLAELNAQMK KDVKEKNEEK
VLEAALEMYL RGYSFLPPDI LKSDYRRFII EGNELRIPLN KIPGVGDNVA LSIIQARMEK
PFTSIDDLKK RTKLSKAHIN TMRKLRILED LPETDQSTLF DF
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