| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmel_1030 |
|---|
| Symbol | |
|---|
| ID | 5297038 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermosipho melanesiensis BI429 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009616 |
|---|
| Strand | - |
|---|
| Start bp | 1059798 |
|---|
| End bp | 1061390 |
|---|
| Gene Length | 1593 bp |
|---|
| Protein Length | 530 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 31% |
|---|
| IMG OID | 640769314 |
|---|
| Product | DNA primase |
|---|
| Protein accession | YP_001306276 |
|---|
| Protein GI | 150020922 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0358] DNA primase (bacterial type) |
|---|
| TIGRFAM ID | [TIGR01391] DNA primase, catalytic core |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTCCCAA AACAAGTTAT TGAAGAAATT AAATCAAAAA TAGATATTGT GGAATTTGTT
TCCCGATATG TAAGCCTACA AAAGGTAGGA AATAATTATC GTGGTCTCTG TCCATTTCAC
ACCGAAACTA CACCATCTTT TTATGTGAAT CCATCCTTCA AGACCTACCA CTGTTTTGGA
TGTGGAGCGT CTGGGGATGT TATTAAGTTT CTAGAAGAAA TAGAGAACAT ATCTTTCAGT
GAAGCGGTTA AAAAGCTTGC AAAAGAAGTT GGAATAAAAG TTGATGTCAA AGTTTCATCT
TTTCAACAGT TATATTATAG ACTCTATGAA CTAATACACG AAGAATACAA AAAACACCTA
CAAAAAAATT CAATAGCTGT AGAATATCTG CAAAAAAGGA GCTTTACAGC TGAAGAGATA
CTAAAGTATG AGTTTGGATT CTCCCCTTTA AATTCAAAAA TCCCACAAAA AGTTGCAGAA
AATTTGGGAA TAAAAATTTT GAAAAAGTTT GGTTTCTCTA CAAAAGATTT ATTTGAGGGA
AGGTTAATTA TTCCCATAAA AGATGAGAAT GGTAGGATAA TAGCCTTTGG TGGAAGACTT
CTAGGTGAAG GACAACCAAA GTATTTGAAC TCCTTTGAAA CGGATTTTTT CAAAAAATCA
AAAACACTCT TTTTACTTGA CAGAGCAAAA GATCAAATTA AAATTGCAGA CTTTGCCATT
ATCTGTGAAG GTTACTTTGA TGCACTTGCA TTCCATAGAG CAGATATAAC AAATGCAGTA
GCAACACTTG GAACTGCATT TACTAAATTT CATGCATTTA AATTGAAAAA AATAACATCA
AACGTGGTAC TTTCATTTGA CACAGATGCT GCAGGATTAA AGGCAGCTCT CCAAAGTATT
AAAATATTAG TTCTCATGGG CTTTAATGTA ATGGTTGCAA ATAAATCTGC AGAAAAAGAT
CCAGATGAAA TTTACAGAAC AAATGGAAAA GAAGGATTGT ACAACTTTAT TAAAGAAGCA
ATACCTGCGG AAAAATTTAT ACCTATTGCT TTGAGTAAAA AATATAACTT TGAAAATCCA
AACGCCATTC AGCTCTTTTT AAAAGAAATA AAAAATTGGG AAAATTTGTT TAAAAATTTT
CCAAAAAGAT TGGAAATTTT CCAAAGTGTT GTAAAAGAAA TCTCGGGAAG TAGTCTTTCC
ACCACAAAAA TTGTTAAAAA AAGCAATTTT TCTCTAGATG ATGTAATAAT CTACATTCTC
ATAAACTATC CCGAAATTGA TCTAGAAATT GACCCTAAGA TTTTAAATAA TCGTTCACTA
GAAATTCTAA AACACTTAAA AAACTTTTCT TTTGAGAATT TGTCTAAAAA ACTGCAAGAG
TATATAAAAG AAGTACTTGA AAAAATGAAA CATGTTGAAA TAAACGAAGA GTATATAGAA
GAAATAAAGA AAAAAATACA AGAAAAAAGC CTCGAAAAAA GGTTGGAAGA AATTGACGAA
TACATAAAAA ACTCAAAAGA TCCTTCTGAA AAAAGACTTC TTCTCAATAC GAGAATAGAG
CTTGTAAGAA AGCTTAAAAA TATTAGGAGG TGA
|
|---|
| Protein sequence | MFPKQVIEEI KSKIDIVEFV SRYVSLQKVG NNYRGLCPFH TETTPSFYVN PSFKTYHCFG
CGASGDVIKF LEEIENISFS EAVKKLAKEV GIKVDVKVSS FQQLYYRLYE LIHEEYKKHL
QKNSIAVEYL QKRSFTAEEI LKYEFGFSPL NSKIPQKVAE NLGIKILKKF GFSTKDLFEG
RLIIPIKDEN GRIIAFGGRL LGEGQPKYLN SFETDFFKKS KTLFLLDRAK DQIKIADFAI
ICEGYFDALA FHRADITNAV ATLGTAFTKF HAFKLKKITS NVVLSFDTDA AGLKAALQSI
KILVLMGFNV MVANKSAEKD PDEIYRTNGK EGLYNFIKEA IPAEKFIPIA LSKKYNFENP
NAIQLFLKEI KNWENLFKNF PKRLEIFQSV VKEISGSSLS TTKIVKKSNF SLDDVIIYIL
INYPEIDLEI DPKILNNRSL EILKHLKNFS FENLSKKLQE YIKEVLEKMK HVEINEEYIE
EIKKKIQEKS LEKRLEEIDE YIKNSKDPSE KRLLLNTRIE LVRKLKNIRR
|
|---|
| |