Gene Tmel_1029 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTmel_1029 
Symbol 
ID5296797 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermosipho melanesiensis BI429 
KingdomBacteria 
Replicon accessionNC_009616 
Strand
Start bp1058678 
End bp1059790 
Gene Length1113 bp 
Protein Length370 aa 
Translation table11 
GC content35% 
IMG OID640769313 
ProductRpoD family RNA polymerase sigma factor 
Protein accessionYP_001306275 
Protein GI150020921 
COG category[K] Transcription 
COG ID[COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 
TIGRFAM ID[TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCAAAAA CAAAGGGATT TTCCATTGAA AAGCAGATTG AAAAGTTAAT AAAAGTAGGA 
AAGGAAAAGG GGTTTGTAAC ATACGACGAT ATAGATAAAA TGTTACCTCC TGAAAAGATA
GATGATTTTG ATGGTAATAT ACTCGAAAAA GTATACGAAG AATTGGAAAA AAACAACATA
TTAATTACGG AAAATAATCC CCAAGAACAG ATAGAAGATG TATCACTTGA AGATTTTCTT
GAAGAATCTC CAAGATTTTA CGACAACATG GCAACAAAAG ACCTTATTAA AATGTACCTA
AAGGATATTG GAAAAATTCC TCTACTCAGC CAATCTATGG AAAGAGAACT TGCAAGACGT
GCTCAGCAAG GAGATGAAAG GGCAAAGCAA AAGCTAGTTG AATCAAACTT AAGACTTGTG
GTAAGTATAG CAAAAAGATA TGTAGGAAAA GGCCTTTCTT TCTTAGATCT CATCCAAGAA
GGAAATGTTG GTTTGTTAAA GGCTGTGGAA AAATTCGATT GGAAGAAAGG ATACAAATTC
TCCACATATG CAACATGGTG GATAAGACAA GCCATAACAA GGGCTATTGC AGACCAAGCA
AGAACCATCA GGGTCCCAGT ACACATGGTG GAAACTATAA ATAAAGTCCA AAAAATCATG
AGAGACTATT ATCAACAACA CGGAACGGAA ATCCCCATTG AAGAACTTGC AAAAATAATA
GGAAAACCCG TTGAAAAGGT TGAAGAAATA CTTCAAGCGG CAAAAGAAAC CACATCACTT
GAAGCACCAG TTGGTGAAGA TGAAGACTCA ACTGTAGGGG ATTTTGTGGC CGATGAAAGT
ATTGCATCCC CTAAAAAAGA AGCTATGAGA ATGTTAATAC GTGAAGAAGT AGAAAAAGTA
CTGGAAACGT TAAATGATAG AGAAAAATTA GTTTTAAAAA TGAGATATGG ACTAATAGAC
GGAAAATCAA AAACATTAGA AGAAGTGGGG CAATATTTTA ATGTAACTAG GGAGAGAATA
AGGCAAATTG AAGTTAAAGC ATTAAGAAAA CTAAGACACC CATCGAGAAG TAGATATTTA
AAACTCCTAT TTAAAATGTC CGACGAATCC TAG
 
Protein sequence
MAKTKGFSIE KQIEKLIKVG KEKGFVTYDD IDKMLPPEKI DDFDGNILEK VYEELEKNNI 
LITENNPQEQ IEDVSLEDFL EESPRFYDNM ATKDLIKMYL KDIGKIPLLS QSMERELARR
AQQGDERAKQ KLVESNLRLV VSIAKRYVGK GLSFLDLIQE GNVGLLKAVE KFDWKKGYKF
STYATWWIRQ AITRAIADQA RTIRVPVHMV ETINKVQKIM RDYYQQHGTE IPIEELAKII
GKPVEKVEEI LQAAKETTSL EAPVGEDEDS TVGDFVADES IASPKKEAMR MLIREEVEKV
LETLNDREKL VLKMRYGLID GKSKTLEEVG QYFNVTRERI RQIEVKALRK LRHPSRSRYL
KLLFKMSDES