| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmel_1029 |
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| Symbol | |
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| ID | 5296797 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermosipho melanesiensis BI429 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009616 |
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| Strand | - |
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| Start bp | 1058678 |
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| End bp | 1059790 |
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| Gene Length | 1113 bp |
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| Protein Length | 370 aa |
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| Translation table | 11 |
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| GC content | 35% |
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| IMG OID | 640769313 |
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| Product | RpoD family RNA polymerase sigma factor |
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| Protein accession | YP_001306275 |
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| Protein GI | 150020921 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAAAAA CAAAGGGATT TTCCATTGAA AAGCAGATTG AAAAGTTAAT AAAAGTAGGA
AAGGAAAAGG GGTTTGTAAC ATACGACGAT ATAGATAAAA TGTTACCTCC TGAAAAGATA
GATGATTTTG ATGGTAATAT ACTCGAAAAA GTATACGAAG AATTGGAAAA AAACAACATA
TTAATTACGG AAAATAATCC CCAAGAACAG ATAGAAGATG TATCACTTGA AGATTTTCTT
GAAGAATCTC CAAGATTTTA CGACAACATG GCAACAAAAG ACCTTATTAA AATGTACCTA
AAGGATATTG GAAAAATTCC TCTACTCAGC CAATCTATGG AAAGAGAACT TGCAAGACGT
GCTCAGCAAG GAGATGAAAG GGCAAAGCAA AAGCTAGTTG AATCAAACTT AAGACTTGTG
GTAAGTATAG CAAAAAGATA TGTAGGAAAA GGCCTTTCTT TCTTAGATCT CATCCAAGAA
GGAAATGTTG GTTTGTTAAA GGCTGTGGAA AAATTCGATT GGAAGAAAGG ATACAAATTC
TCCACATATG CAACATGGTG GATAAGACAA GCCATAACAA GGGCTATTGC AGACCAAGCA
AGAACCATCA GGGTCCCAGT ACACATGGTG GAAACTATAA ATAAAGTCCA AAAAATCATG
AGAGACTATT ATCAACAACA CGGAACGGAA ATCCCCATTG AAGAACTTGC AAAAATAATA
GGAAAACCCG TTGAAAAGGT TGAAGAAATA CTTCAAGCGG CAAAAGAAAC CACATCACTT
GAAGCACCAG TTGGTGAAGA TGAAGACTCA ACTGTAGGGG ATTTTGTGGC CGATGAAAGT
ATTGCATCCC CTAAAAAAGA AGCTATGAGA ATGTTAATAC GTGAAGAAGT AGAAAAAGTA
CTGGAAACGT TAAATGATAG AGAAAAATTA GTTTTAAAAA TGAGATATGG ACTAATAGAC
GGAAAATCAA AAACATTAGA AGAAGTGGGG CAATATTTTA ATGTAACTAG GGAGAGAATA
AGGCAAATTG AAGTTAAAGC ATTAAGAAAA CTAAGACACC CATCGAGAAG TAGATATTTA
AAACTCCTAT TTAAAATGTC CGACGAATCC TAG
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| Protein sequence | MAKTKGFSIE KQIEKLIKVG KEKGFVTYDD IDKMLPPEKI DDFDGNILEK VYEELEKNNI
LITENNPQEQ IEDVSLEDFL EESPRFYDNM ATKDLIKMYL KDIGKIPLLS QSMERELARR
AQQGDERAKQ KLVESNLRLV VSIAKRYVGK GLSFLDLIQE GNVGLLKAVE KFDWKKGYKF
STYATWWIRQ AITRAIADQA RTIRVPVHMV ETINKVQKIM RDYYQQHGTE IPIEELAKII
GKPVEKVEEI LQAAKETTSL EAPVGEDEDS TVGDFVADES IASPKKEAMR MLIREEVEKV
LETLNDREKL VLKMRYGLID GKSKTLEEVG QYFNVTRERI RQIEVKALRK LRHPSRSRYL
KLLFKMSDES
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