| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmel_0991 |
|---|
| Symbol | |
|---|
| ID | 5296741 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermosipho melanesiensis BI429 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009616 |
|---|
| Strand | - |
|---|
| Start bp | 1010370 |
|---|
| End bp | 1011230 |
|---|
| Gene Length | 861 bp |
|---|
| Protein Length | 286 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 28% |
|---|
| IMG OID | 640769275 |
|---|
| Product | cysteinyl-tRNA synthetase |
|---|
| Protein accession | YP_001306237 |
|---|
| Protein GI | 150020883 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2342] Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase |
|---|
| TIGRFAM ID | [TIGR01370] possible cysteinyl-tRNA synthetase, Methanococcus type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00231888 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAAATATC TTACATTGAT ATTAATTGCG CTAATACTAA TACAAATACC AAGCATAGAA
AAAACAGATG TTCCATTTAT CTACCAACTA CAAAAAATAG ATATAAAAAA AATCTATGAT
CTTTATACCC CAAAGTTTTT AGTGATAGAT GTGTTTGAAA TATTAAATAA TGAAGACAAA
ATCTACCTAC AAAAACTCAG AAAAAACGGC ACAATAGTAC TAGCCTATAT AAGTATAGGA
GAAGCAGAAG ATTATAGATA CTACTGGAAA GATATATGGT GGAAAGATCC TCCAAACTGG
TTAGGGAAAG AAAACGAAAA TTGGAAAGGA AACTATAAAG TAAAATACTG GTACAAGGAA
TGGAAAGAAA TAGTATTTCA AACAATAAAC AAAATAATTT CAAAAACAGA GGTTGACGGA
TTATATCTAG ATATAATAGA TGCATTTGAA TATTGGGCAC AAAACGGGTA TGATATAGAA
TTTACTGCAC ATGAAATGAT TAATTTCGTG AAAGAGATAA AAAATAGATA TAAATTACTA
ATAGTTCCAC AAAATGGAGA AAGTATACTA AACTTTGACA CCGACAGCTC TTATCTAAAC
TCAATTGATG GAATCGGTAT AGAAGATTTG TTTTTCTACA AAAGCAAAAA ATTAAAACAC
ACCCAAGAAA GACTAAAATA CATTTTAAAA ATTAAAAAAG AAGGAAAATT TGTATTGGTA
ACAGACTATA TTTTCCCATC TAAAGTAATT GATGAATTTA TAACCCTCTG TGAGACATAC
GGTTTTTATG GATATCCAGC TAACAAAAAT AAATTGCTAA AAGATTTATC TTTTGGACTT
AAATATTTAA AAAAAAAGTG A
|
|---|
| Protein sequence | MKYLTLILIA LILIQIPSIE KTDVPFIYQL QKIDIKKIYD LYTPKFLVID VFEILNNEDK
IYLQKLRKNG TIVLAYISIG EAEDYRYYWK DIWWKDPPNW LGKENENWKG NYKVKYWYKE
WKEIVFQTIN KIISKTEVDG LYLDIIDAFE YWAQNGYDIE FTAHEMINFV KEIKNRYKLL
IVPQNGESIL NFDTDSSYLN SIDGIGIEDL FFYKSKKLKH TQERLKYILK IKKEGKFVLV
TDYIFPSKVI DEFITLCETY GFYGYPANKN KLLKDLSFGL KYLKKK
|
|---|
| |