Gene Tmel_0981 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTmel_0981 
Symbol 
ID5296546 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermosipho melanesiensis BI429 
KingdomBacteria 
Replicon accessionNC_009616 
Strand+ 
Start bp1001973 
End bp1002959 
Gene Length987 bp 
Protein Length328 aa 
Translation table11 
GC content33% 
IMG OID640769265 
ProductDNA-directed RNA polymerase subunit alpha 
Protein accessionYP_001306227 
Protein GI150020873 
COG category[K] Transcription 
COG ID[COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit 
TIGRFAM ID[TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.925287 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATTTTA TTATGCCCAA AAATCTTAAG ATGGAAGATC ATTCTGAAAC AGATGAGCAT 
TATTATGCGC GATTCGTATT GTCTCCATTG GAAAAAGGGT ATGCAACAAC GATTGGTAAT 
ACATTGAGGA GGGTTTTACT TTCTTCCATT CCTTCACTTG CAATTACTGA TGTAAAATTT 
GTAAGGCCAG AGAAGTATCA CGAATTTGAT ACTATTGAAG GTGTAAAAGA AGATATAATA 
GAAATTTTGT TAAATTTAAA AAAAGTTCAG CTAAAGATGG AAAGTTATGT GAATACACCT 
GTAGAACTGA CAATTCAGCA TAAAGGTGAA GGAGAAATTA AAGCAGGGGA TATAGTTGTT 
CCGGCAGGTG TGACTGTAAC AAATCCGAAT TTACATATAG CAACTTTGAA TGAAGATGCA 
GATATAGAGA TAAAGATGTA TGCAACCGTT GGAAAAGGTT TTGTTCCAGC AGCTGAAAGA 
AACGAAAGAC CTGATATTGG TTGGATTGTA TTAGATGGGG TATACAATCC CATATTGAAG 
GTTAATTGGA AGATAGAGAA TGTTAGGGTT GGTAAAAAAA CAGACTATGA TAAATTGATT 
TTGGAAGTTT GGACTAAGAA GAATATAAAA CCTGTTGAAG CTTTAAAGCA AGCAGTTAAG 
ATAATTAATG ATCACTTTAA ACTAATTGAA GAGAGTTTTG GAGATATGGA AGATGCAGGT 
ATAGTTATTG AAACAACAAA AGCGGAAATT GTTGAGGAAA AAATAGATGA AAACGAGATT 
TTGAATAAGA AGATAGACGA GTTGGATTTA TCCATGAGGG CATTGAATTG TTTAAAAAGA 
GATAAAATTG AAACGATAGG TGACTTGTTA GAAAGAGGAG AGGAAGAGTT ATTAAAAATA 
AAGAACTTTG GTCAAAAGTC ATTAGATGAA GTCAAAGAAA AGTTGATGGA GAAGTTCGGA 
ATTAGTTTTG GAAAGGAGGA AGAATAA
 
Protein sequence
MDFIMPKNLK MEDHSETDEH YYARFVLSPL EKGYATTIGN TLRRVLLSSI PSLAITDVKF 
VRPEKYHEFD TIEGVKEDII EILLNLKKVQ LKMESYVNTP VELTIQHKGE GEIKAGDIVV 
PAGVTVTNPN LHIATLNEDA DIEIKMYATV GKGFVPAAER NERPDIGWIV LDGVYNPILK 
VNWKIENVRV GKKTDYDKLI LEVWTKKNIK PVEALKQAVK IINDHFKLIE ESFGDMEDAG 
IVIETTKAEI VEEKIDENEI LNKKIDELDL SMRALNCLKR DKIETIGDLL ERGEEELLKI 
KNFGQKSLDE VKEKLMEKFG ISFGKEEE