| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmel_0980 |
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| Symbol | rpsD |
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| ID | 5296545 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermosipho melanesiensis BI429 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009616 |
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| Strand | + |
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| Start bp | 1001337 |
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| End bp | 1001966 |
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| Gene Length | 630 bp |
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| Protein Length | 209 aa |
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| Translation table | 11 |
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| GC content | 35% |
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| IMG OID | 640769264 |
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| Product | 30S ribosomal protein S4 |
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| Protein accession | YP_001306226 |
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| Protein GI | 150020872 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0522] Ribosomal protein S4 and related proteins |
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| TIGRFAM ID | [TIGR01017] ribosomal protein S4, bacterial/organelle type |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.40186 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCTAGAT ATACAGGTCC ACAATGTAAA CTTTGCAGAC GCGAAGGAAT GAAGTTGTAC
CTGAAAGGTG AAAGGTGTTT TACAGATAAA TGTGCATTTG ATAGAAGACC TTTTGCTCCA
GGTGATCATG GTAGAGAAAA GAAAAAGTTA ACACAATATG GAATCCAATT AAGGGCAAAA
CAAACAATGA AGAGAATTTA TGGAGTTCTT GAAGCGCAAT TTAGAAGATA TTACGAGAAA
GCCGCAAAAA AATCAGGAGA TACCCGTGAA AATCTTGTTG TTCAAGTAGA AAGAAGACTC
GATAATGTAG TATATAGGTT GGGTTTTGCA GTTAATAGAA CAACGGCAAG ACAGCTTGTA
AGTCATGGAC ACTTTTTAGT TAATGGAAAA AAGGTTAATA TTCCTTCATA TCAAGTTAGA
CCTGGTGATG TAATAGAAGT TAGGGAAAAA AGTAAGGACA TTCTTCCGAT AAAAAATGCT
ATTGAACTAA ACAAGGATAA AAATAGAATG CCATGGCTTT CTGTTGATTT TGAAAACTAT
AAAGGGGTTT ACGAAAGACA TCCAAAACTA GAAGAAGTTA TTGATCTTCC AGTTGATGTA
CAAGCAATTA TTGAATTGTA CTCGAGGTGA
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| Protein sequence | MARYTGPQCK LCRREGMKLY LKGERCFTDK CAFDRRPFAP GDHGREKKKL TQYGIQLRAK
QTMKRIYGVL EAQFRRYYEK AAKKSGDTRE NLVVQVERRL DNVVYRLGFA VNRTTARQLV
SHGHFLVNGK KVNIPSYQVR PGDVIEVREK SKDILPIKNA IELNKDKNRM PWLSVDFENY
KGVYERHPKL EEVIDLPVDV QAIIELYSR
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