Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tmel_0954 |
Symbol | rplD |
ID | 5296854 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thermosipho melanesiensis BI429 |
Kingdom | Bacteria |
Replicon accession | NC_009616 |
Strand | + |
Start bp | 989288 |
End bp | 989953 |
Gene Length | 666 bp |
Protein Length | 221 aa |
Translation table | 11 |
GC content | 36% |
IMG OID | 640769238 |
Product | 50S ribosomal protein L4 |
Protein accession | YP_001306200 |
Protein GI | 150020846 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0088] Ribosomal protein L4 |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.000000111144 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCAAAAG TTGATTTATT CAATATTAAA GGTGAAAACA TCGGAACAGT TGAATTAAAA GAGGAAGTTT TTGCAATTGA GCCAAATCAA GATGTCATGT GGCGTTATAT CGACATGCAA CTTACAAATT CAAGAGCAGG AACTGCATCC ACAAAGACAC GTGGAGAAGT TTCTGGTGGT GGAAGAAAAC CTTGGATTCA AAAGCACACA GGAAGAGCAA GGCAAGGTTC AATTAGAGCT CCTCATTGGA GACATGGTGG AGTTGCTCAT GGTCCGAAAC CAAGGGTATA TTTTAAAAGA TTAAACAAAA AAATGAAGAG ACTTGCTTTA AAATCTGCAT TGTCTTTAAG ATTAAAAGAG AATAACTTAG TGGTGGTTGA CGATATTAAA TTTGAAAAGC CAAGAACAAA AGACTTGAGG GAAGTTTTGA AAAACTTGGG ACTTGAAAAT CAAAAAGTTT TAATAGTACT TCCAAAAAAA GAAAGTGAGT ATGAGAATGT AAAAATTTCT GGACGAAATA TTCCTGGTGT AAAAGTTTTG ATTGCCGATA ATCCAGGAGT AGATAGAGTA AATATTGATG GTTTAAACGT TTACGATATT TTAAACCATG ATAAACTTGT GCTCCTCCAG GGTACCGTCC AGAAGATTGA GGAGGTGCTC GGATAA
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Protein sequence | MAKVDLFNIK GENIGTVELK EEVFAIEPNQ DVMWRYIDMQ LTNSRAGTAS TKTRGEVSGG GRKPWIQKHT GRARQGSIRA PHWRHGGVAH GPKPRVYFKR LNKKMKRLAL KSALSLRLKE NNLVVVDDIK FEKPRTKDLR EVLKNLGLEN QKVLIVLPKK ESEYENVKIS GRNIPGVKVL IADNPGVDRV NIDGLNVYDI LNHDKLVLLQ GTVQKIEEVL G
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