| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmel_0897 |
|---|
| Symbol | |
|---|
| ID | 5297886 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermosipho melanesiensis BI429 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009616 |
|---|
| Strand | + |
|---|
| Start bp | 935060 |
|---|
| End bp | 935548 |
|---|
| Gene Length | 489 bp |
|---|
| Protein Length | 162 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 29% |
|---|
| IMG OID | 640769176 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001306143 |
|---|
| Protein GI | 150020789 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4970] Tfp pilus assembly protein FimT |
|---|
| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTAAAAA CTGGATTTAC ATTATTGGAG ATATTAATTG TACTGGTTAT ACTTTCGGTT
TTATTCGGTA TAGGTTATGT AAGTTTTGAA ACTGTATACA GAAATATTTC TACCGAATCT
AGGCTTTCAG GAATTTCTCA GAATTTGTTC TTTTTTCTTG TTGAGGCAAG AAGAGGAGCA
GTATTAAAGG ATACAATTTA TTGTATAAAG TTTAATGGTG GTAAATTTTA TTCTTTTGTT
GACGAAGATT TAGATGGAAA TTCGGATAAT GGAAAAAAAT CCGAGATTTC ATTGGAAGAA
TCGATGGAAG TATATGTTAA TGGAAATAAA GTGGAAAATT TTGAGATATA TACTTACGAT
GCATTTTTTT TGAAAAAGAG TGGAAATACG TTGATAACGG AGTATTCTAA TTTAGAGATT
GAGATAAAGT ATAAAGACAG AACAAAGGTT ATAAAAATAG AAAATTCCTT GCCAAAGATT
TTGGAGTGA
|
|---|
| Protein sequence | MVKTGFTLLE ILIVLVILSV LFGIGYVSFE TVYRNISTES RLSGISQNLF FFLVEARRGA
VLKDTIYCIK FNGGKFYSFV DEDLDGNSDN GKKSEISLEE SMEVYVNGNK VENFEIYTYD
AFFLKKSGNT LITEYSNLEI EIKYKDRTKV IKIENSLPKI LE
|
|---|
| |