| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmel_0818 |
|---|
| Symbol | |
|---|
| ID | 5298119 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermosipho melanesiensis BI429 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009616 |
|---|
| Strand | + |
|---|
| Start bp | 858286 |
|---|
| End bp | 859533 |
|---|
| Gene Length | 1248 bp |
|---|
| Protein Length | 415 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 640769095 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_001306064 |
|---|
| Protein GI | 150020710 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAAAAAGT TTATTATTTT CTTTTTAGCT ATTTTACTTA CATTAAGTGT GTTTGCACAA
GAAAATGCAT TGGAAATATT TAGTTGGTGG ACTGGTGGAG GGGAAGAAGA AGGTTTGCTT
GCTTTATTTA AACTATTCAA CGAACATTAT CCTGATGTAA AAATAATAAA CGCTGCAGTT
GCAGGAGGAG CAGGTACAAA TGCAAAAGCT GTATTGAAGA CGAGAATGCT TGGTGGAAAT
CCTCCCGATT CCTTCCAAGT TCATGCAGGA ATGGAATTGA CGGATACATA CGTAATACCA
GGACTTATGG AACCCATTAC TTGGATTTTA AAAGAGATTG ATGCGTATGA TAAGTTTCCA
AAAGATTTGA TAGATATAGT AAGCTATGAA GGAGAAGTTT ATTCAATACC TGTCAATGTT
CACAGGGCAA ATGTTGTGTT TTATAACAAG GAAATAGCCA AGAAAATTGG GATGACAAAA
GAACCAACTA CTTGGACAGA ATTTTTGACA TATTTGGATA AAGCTCAGAA AATGGGATAT
GCGGGGATAT CTCTTGGAGA TAAAAATAAG TGGACTTCGT TGCATTTGTT TGAAAGTATA
ATGCTTTCAC AATTAGGTCC TGAAAAGTAT AACAAGCTCT GGAAAGGGGA AGCTTCATTT
AATGATCCAG CAATTAAACA AGCGTTAATT ATATTGAAAG ATGTACTAAA CTATGTAAAT
TCAGATCATT CTGCCTTAAC TTGGCAAGAT GCAACGAGAA TGGTATTTGA AGGAAAGGCA
TTTTGTAACA TGATGGGAGA TTGGGCAGAA GGTTATCTAA AAACATTAGG TTGGAAACCA
GGTGTCGAAT TTGGTTGGTT TGCTTTGCCT GGTACCCAAA ATGCATTTAT GCTTGTTTCT
GATACATTTG GATTACCCAA GAACGCACCT CATAGAGAAA ATGCAATAAA GTGGCTCAAA
TTTTTGGCAA CAGTTGAGGC ACAAGATACA TTTAATCCTA TAAAAGGATC TATACCTGCA
AGGATAGATG CTGATAAATC AAAGTATGAT TCATACTTAA AATGGTCAAT GAATGATTTT
TCTACAAAAG TCATTTCACC TTCTATTATC CACGGTTCAG CTGCACCTGA ATCGTTTGCA
ACGGCTTTAA TGGATGCAAT TAATATATTT GTCACTGAGA AAAACGTTGA TAAAACATTT
AAGGAAATTT TGTGGATAGC AGAAGATAAT GGTTATGTAA CAGATTAA
|
|---|
| Protein sequence | MKKFIIFFLA ILLTLSVFAQ ENALEIFSWW TGGGEEEGLL ALFKLFNEHY PDVKIINAAV
AGGAGTNAKA VLKTRMLGGN PPDSFQVHAG MELTDTYVIP GLMEPITWIL KEIDAYDKFP
KDLIDIVSYE GEVYSIPVNV HRANVVFYNK EIAKKIGMTK EPTTWTEFLT YLDKAQKMGY
AGISLGDKNK WTSLHLFESI MLSQLGPEKY NKLWKGEASF NDPAIKQALI ILKDVLNYVN
SDHSALTWQD ATRMVFEGKA FCNMMGDWAE GYLKTLGWKP GVEFGWFALP GTQNAFMLVS
DTFGLPKNAP HRENAIKWLK FLATVEAQDT FNPIKGSIPA RIDADKSKYD SYLKWSMNDF
STKVISPSII HGSAAPESFA TALMDAINIF VTEKNVDKTF KEILWIAEDN GYVTD
|
|---|
| |