Gene Tmel_0626 details

Gene Information

• Locus tag: Tmel_0626
• Symbol: clpX
• ID: 5296985
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thermosipho melanesiensis BI429
• Kingdom: Bacteria
• Replicon accession: NC_009616
• Strand: +
• Start bp: 667575
• End bp: 668801
• Gene Length: 1227 bp
• Protein Length: 408 aa
• Translation table: 11
• GC content: 34%
• IMG OID: 640768898
• Product: ATP-dependent protease ATP-binding subunit ClpX
• Protein accession: YP_001305875
• Protein GI: 150020521
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG1219] ATP-dependent protease Clp, ATPase subunit
• TIGRFAM ID: [TIGR00382] endopeptidase Clp ATP-binding regulatory subunit (clpX)

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCGCAAA AATTTTGTTC ATTTTGTGGA AGATCCTCAG ACAAGGTAGA AAAACTTATA 
GCAGGACCCG GAAATGTATA TATTTGTAAT GACTGTGTTG AAATCTTCCA CGATATACTG 
TACGAAGATA AAAGATCAAG TAATCAGAAA AAAAGAAAAA AAGAAGACCT TCCGAAACCT 
TCACAAATAA AAGCAGAACT TGACAAATAC GTAATTGGTC AAGAAAGGGT TAAAAAAATC 
CTTTCTGTTG CTGTTTACAA CCATTACAAA CGGGTTTTTT CTAACGTGGA TTTTGACGAT 
GTTGAAATAG AAAAATCAAA CGTAATACTA ATAGGACCAA CGGGAAGTGG AAAAACATTA 
ATTGCGAGAA CACTTGCAAA AATTCTCGAT GTTCCATTTG CTATAGCTGA TGCAACACCA 
TTAACGGAAG CGGGATACGT AGGTGAAGAC GTAGAAAATG TTATACTAAG ACTTTTGGAA 
GTAACAAACT TTGATATAGA AAGAGCACAA TATGGAATAA TATACATAGA TGAAATTGAC 
AAAATTGCAA AAAAATCCCC TAATCCATCA ATAACAAGGG ATGTTTCCGG TGAAGGTGTA 
CAACAAGCAT TATTAAAAAT CGTCGAAGGA ACCATTGCAA ATGTTCCACC ACAAGGTGGC 
AGGAAACACC CATATCAAGA ATTCTTAAAG GTTGACACAT CAAATATTTT ATTCATAGTT 
GGTGGCGCTT TTGATGGTAT TGAGGAAATA ATAAAAAGAA GAATCCAAAG TAGCGCTATG 
GGATTTAACG CTCCTATAAA AAGTAAAAAA GAAATGAAAC TTGGGGAAAT ACTCTCACAT 
ATAACACCAG AAGATCTTGT ACAATACGGC CTTATACCAG AATTTGTTGG AAGATTTCCG 
GTAATTGGTG CACTAGAAGA CCTCACAGAA GATGACATGG TAAGAATACT TACAGAACCC 
AAAAATGCTA TTTTAAAACA ATACAAAAAA TTATTCTTAA TAGATAATAT AGAGTTGGAA 
GTTACAAAAG ATGCACTTTA TGCCATTGCA CGAAAAGCAG CAAAAAGGGG AACAGGTGCC 
CGTGCTTTAA AGAGTGTTTT TGAAGAAGTA ATGATAGATG TTATGTTTGA AATTCCAGAT 
TTAGACAACG TAGAAAAGGT AATTGTAACA GAAAAATGTG TAACCAAGAA GGAAAAACCA 
AAGTTAATTG TTAAGGAGAC TGCATAA 

 

Protein sequence

MAQKFCSFCG RSSDKVEKLI AGPGNVYICN DCVEIFHDIL YEDKRSSNQK KRKKEDLPKP 
SQIKAELDKY VIGQERVKKI LSVAVYNHYK RVFSNVDFDD VEIEKSNVIL IGPTGSGKTL 
IARTLAKILD VPFAIADATP LTEAGYVGED VENVILRLLE VTNFDIERAQ YGIIYIDEID 
KIAKKSPNPS ITRDVSGEGV QQALLKIVEG TIANVPPQGG RKHPYQEFLK VDTSNILFIV 
GGAFDGIEEI IKRRIQSSAM GFNAPIKSKK EMKLGEILSH ITPEDLVQYG LIPEFVGRFP 
VIGALEDLTE DDMVRILTEP KNAILKQYKK LFLIDNIELE VTKDALYAIA RKAAKRGTGA 
RALKSVFEEV MIDVMFEIPD LDNVEKVIVT EKCVTKKEKP KLIVKETA