Gene Tmel_0543 details

Gene Information

• Locus tag: Tmel_0543
• ID: 5296772
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thermosipho melanesiensis BI429
• Kingdom: Bacteria
• Replicon accession: NC_009616
• Strand: +
• Start bp: 578344
• End bp: 579015
• Gene Length: 672 bp
• Protein Length: 223 aa
• Translation table: 11
• GC content: 31%
• IMG OID: 640768804
• Product: rhomboid family protein
• Protein accession: YP_001305795
• Protein GI: 150020441
• COG category: [R] General function prediction only
• COG ID: [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Plasmid Coverage information

• Num covering plasmid clones: 27
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGAAAG AAAGCTTTTA TTATCTTATT CTAATTAACA TAATTATTCT TTTATTAATC 
GAAATATTAA AGTTTTTTAT ACCAAATGAA GTTATGCTTT ATCTTTTATT CGGGGCACAA 
TATGGCCCCC TTGTTTCTAG TGGACAATGG TATAGGATTG TTACTGCAAT GTTTGTTCAC 
GGTGGTTTTA TTCATCTTGT TTTTAACATG TATGCGTTAT ATTTTCTCGG TCGTATAGTT 
GAAAACGTAT ATGGAACAGA TAAGTTCTTG TTTTTTTACT TTTCAACAGG TATAATCGGG 
AATTTAGCAA CACAATTTTT CTACTATAAC TCATTTTCTG TTGGAGCAAG TGGCGCTATT 
TTTGGACTTG TTGGCGTTTT GTTTGCAGCA GGTTTTAGAA GAGACACACC ATATACTTTA 
AAACCAATAA CAGGAACGGC ATTTCTTCCC ATGATACTAG TAAACATTTT TTTGGGTTTT 
ATACCCGGTT CGAATATTAA TAACGCAGCT CATTTAGGTG GTTTTTTAAG TGGAATGGCA 
TTGGGTTATT TTATTCCTAT ATATGAATAT TCTTGGAATA TAAGAAAATT GTGGAAGATT 
TTAAGTAGAG TTTTAGTTGG AGTTATTATT GTTTCTTACA TATTCCTTAT CATTGAGGGT 
GTGAAAGGAT GA 

 

Protein sequence

MKKESFYYLI LINIIILLLI EILKFFIPNE VMLYLLFGAQ YGPLVSSGQW YRIVTAMFVH 
GGFIHLVFNM YALYFLGRIV ENVYGTDKFL FFYFSTGIIG NLATQFFYYN SFSVGASGAI 
FGLVGVLFAA GFRRDTPYTL KPITGTAFLP MILVNIFLGF IPGSNINNAA HLGGFLSGMA 
LGYFIPIYEY SWNIRKLWKI LSRVLVGVII VSYIFLIIEG VKG