| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmel_0502 |
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| Symbol | rpoB |
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| ID | 5298409 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermosipho melanesiensis BI429 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009616 |
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| Strand | - |
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| Start bp | 533965 |
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| End bp | 537483 |
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| Gene Length | 3519 bp |
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| Protein Length | 1172 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 640768763 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_001305754 |
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| Protein GI | 150020400 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.145308 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGAAA TTAAAAGAGG AAAAAGGACC CGATATTCTT TTGAAAGGGT CCAAACACCT
ATCCCAGTTC CCAATCTTGT GGAAATCCAA ACAAAATCTT ACCAAGATTT CCTCGAGAAT
GGGATACTAA AGGTTCTTAA AAAATTCTCT CCAATAACAT CCTCAAAATC TGACTTAAGA
AAGGAAAAAG GTTTTTCCCT GGAGTTTGTT TCTGTAAGAA TTGGCGAACC TCAAAATACT
GTCCAAGAAT GTAAGGAAAG ATTACTTACT TATACGGTTC CTGTATACAC AACCGTGCGT
ATTACAGATA ACAGTACCAA CGAGATGATA GAAGAAGAAG CCTTTTTGGG CTATATTCCT
TATATGACTC CAAGAACCAC CTTCATAATC AACGGAGCGG AAAGGGTTGT AGTTAACCAA
CTTGTTAGAA GTCCTGGGAT TTACTTTGTT GAAGAAGCAA AAAAAACAAG TGGGACAAAA
CCCATATATG TTGCACATTT TTTACCAGTA AGAGGTGCAT GGCTTGAGAT CCTTCTCAAT
CTAAATGATG AAGTATTCTA TGCAAGAATT GATAGAAAAA GAAGAATAAA TCTCTTTTTG
CTTTTAAAGG CGTTAGGTTA CAGTGAAGAT TTGGAATTGT TATCATTATT CCCATATTGG
ATAGATGTTG AAGACGAATA TACATTACAA CATTCCGAGG GGCTTATTAT CCTTGAAGAT
GTAAAGACAA AAAATGGAGG GCTTATTGCA AAAAGAGGTG ACGTGATTAC CCAAGGGCTT
ATAGAAAAAC TTGAAAACAG CGATATACAA AAGATTAAAG TGGCACATAG ATATGCTGTG
AACACATTAG AAAAACTCAA TCACGTATAC GGGGAAAATA TAGAAGAAAA CAGGGCATAT
ATAGAAATAT TTAGAAAATT AAGACCTGGT GAGCTTCCAA GAATTAATGC CGCTAAAATC
TTTCTTAGGA ATCTTTATTT TAACGAAGAA AGATTTGAAC TTTCAGAAGT AGGAAGATTT
AAAATGAACA ATAGACTTGA AGAAGCGTAT AGAAAGTATT TGATAGAAGT TGAGGGAAAG
GATCCTCAAG GAGTTGAAGA AGTAAAGTAC GACGAAACTT CAAATGTATT AACGCCAATG
GACATAGTGC TTGCATCAAG AAATTTAATT GAGATAGATA AACACCCAGG TACGATGGAT
ACCAAGGACC ATCTTGGTAA TAAAAGGGTT AGAACAGTTG GTGAATTAAT TAGAATAGAG
TTTGAAAGGG CATTTTCAAA AGCAGTATTT ATGATTCAAG AAAAACTTGC AACATATACT
TCTTTAGATA AAATATCTGT CCAAAGTTTA ATTAATGTTA AATCAATAAT TGCAACTATT
AATTCTTTCT TTGCAACCAA TCCATTGTCT CAGTTTATGG ATCAAACAAA TCCACTTGCA
GAATTGACAC ACAAAAGAAG GTTAACGGCA GTTGGGCCTG GAGGTTTGAA AAGAGAACGT
GCAAGATTCG AAGTGCGTGA CGTACACCAC TCGCATTATG GAAGGATGTG TCCAATTGAA
ACACCAGAAG GTGCCAACAT CGGGCTTATT ACTTCTCTTT CAGTTTATTC ATCAATAGAT
AAATTTGGAT TTTTAATTAC ACCTTACGTT AAAGTAGTAA AGGGTAAGGT GACAAATGAA
ATTGTGTATT TAACCGCAGA TGAGGAAGAA AATTACAAAA TTGCTCCATC TACAATTCCA
ATAGATGAAA AAGGAAATAT AATTCCGGAA AATGTTACTG TAAGGTATGA AGAAAAGGTT
TTGTATGTTA ACAAAAATAA CGTTCAATTT ATAGATGTTG CCCCAAACCA AATTGTTAGT
GTATCTACAT CTTTGATCCC ATTCTTGGAA CACGATGATG CAAACAGGGC ATTAATGGGT
TCTAACATGC AAAGACAAGG AGTTCCATTA ATTGAAACGG AAGCTCCGAG AGTTGGAACT
GGAATGGAAT GGGAAGCAGC AAAATATTCA GGTACGTTAA TTCTTGCAAA GCACGATGGT
ATTGTAAAAA AAGTCGATGC TCAAAAAATA GTAATTCATA GAATAGATGA AAACGGAAAA
GAAATGTATG ATTCAATGGG AAATCCAATG TTAGACATTT ATGAGCTTTT GAAATTTACG
AGAACAAACC AAGATACTTG TATAAACCAA AGACCAATTG TTAATGTTGG GGAAATAGTG
AAAAAGGATG AACCAATAGC AGATGGTCCT GCAACAGATA TGGGTGAACT TGCATTGGGT
AAAAACGTTT TAGTTGCGTT TGTACCATGG GAAGGATACA ATTTTGAAGA TGCTATATTA
ATAAGTGAAG AACTTCTTGA AAAAGAAACA TATACATCTA TTCATATAGA AGTTTATGAA
ACAACGGCAA GAGATACAAG GTTGGGGCCT GAAGAAATTA CTCCAGATAT TCCAAACGTA
AGTAAAGAAA AACTTAGAAA TTTAGATGAA GATGGGATAA TAAGAATAGG TGCTTATGTT
CAAGAGACGG ATATCCTTGT TGGTAAAGTA ACACCAAAAA GCGAGAGTGA TACAACACCA
GAAGAAAAGA TTATAAGATC CGTATTCGGT GAAAAAGGTA AAGAGGTAAA AGATACTTCT
TTAAGGGTGC CTCATGGTAT TGAAGGAAGG GTAATTGCAG TACACGTATT TGACAAAGAA
AAAGACGGTG ATTTAGGACC AGGTGTAAAT AAACTGATAA GGGTATATGT TGCCATTAGA
AAACCACTTG AAGTTGGAGA TAAATTAGCT GGAAGACACG GAAATAAAGG TGTTGTTTCT
AAAATATTAC CAAAAGAGGA TATGCCGTTT TTACCAGATG GGACGCCTAT ACAGGTTGTA
TTGAGTCCTC TTGGAGTTCC ATCGCGTATG AATGTGGGAC AGATATTGGA AACAAGCCTT
GGATGGCTTG CTATGCTTAC AAACAGATGG TTTGCAACTC CTGTGTTTGA TGGTGCAAAA
GAAGGAGATA TTTTACCTGA ACTTTATAAG GCGAGAAAAA AATTTGGACT TGAGATGGGA
GATTTTGAAG AAAATCCAAG TGGTAAAGTT ATATTAAGAG ATGGTAGAAC TGGTAAAGAA
TTTGATCATC CAATATTGGT TGGATATATG TATGTAATGA AACTCATACA CATAGCAAGA
GACAAAATAC ACGCAAGGTC AACAGGGCCA TATTCTCTCA TTCACCAACA GCCATTGGGT
GGAAAAGCAC AGTTTGGAGG TCAAAGATTT GGTGAAATGG AAGTTTGGGC ACTTGAAGCA
TATGGAGCTG CACACACACT AAATGAAATG CTTACAGTAA AGAGTGATGA TATTAGGGGA
AGGAATGAAG TTTACAAGGC GATAATGAAG GGTAAGAATA TTCCAGAACC AGGTCTTCCC
GAAAGTTTCA AGGTTCTTGT AAGAGAACTA AGAGGAATTG CACTAGATGT CAGAGTATAC
GACGATGAAG GTAACGAAAT TGACATTGAA AAGTTATAA
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| Protein sequence | MKEIKRGKRT RYSFERVQTP IPVPNLVEIQ TKSYQDFLEN GILKVLKKFS PITSSKSDLR
KEKGFSLEFV SVRIGEPQNT VQECKERLLT YTVPVYTTVR ITDNSTNEMI EEEAFLGYIP
YMTPRTTFII NGAERVVVNQ LVRSPGIYFV EEAKKTSGTK PIYVAHFLPV RGAWLEILLN
LNDEVFYARI DRKRRINLFL LLKALGYSED LELLSLFPYW IDVEDEYTLQ HSEGLIILED
VKTKNGGLIA KRGDVITQGL IEKLENSDIQ KIKVAHRYAV NTLEKLNHVY GENIEENRAY
IEIFRKLRPG ELPRINAAKI FLRNLYFNEE RFELSEVGRF KMNNRLEEAY RKYLIEVEGK
DPQGVEEVKY DETSNVLTPM DIVLASRNLI EIDKHPGTMD TKDHLGNKRV RTVGELIRIE
FERAFSKAVF MIQEKLATYT SLDKISVQSL INVKSIIATI NSFFATNPLS QFMDQTNPLA
ELTHKRRLTA VGPGGLKRER ARFEVRDVHH SHYGRMCPIE TPEGANIGLI TSLSVYSSID
KFGFLITPYV KVVKGKVTNE IVYLTADEEE NYKIAPSTIP IDEKGNIIPE NVTVRYEEKV
LYVNKNNVQF IDVAPNQIVS VSTSLIPFLE HDDANRALMG SNMQRQGVPL IETEAPRVGT
GMEWEAAKYS GTLILAKHDG IVKKVDAQKI VIHRIDENGK EMYDSMGNPM LDIYELLKFT
RTNQDTCINQ RPIVNVGEIV KKDEPIADGP ATDMGELALG KNVLVAFVPW EGYNFEDAIL
ISEELLEKET YTSIHIEVYE TTARDTRLGP EEITPDIPNV SKEKLRNLDE DGIIRIGAYV
QETDILVGKV TPKSESDTTP EEKIIRSVFG EKGKEVKDTS LRVPHGIEGR VIAVHVFDKE
KDGDLGPGVN KLIRVYVAIR KPLEVGDKLA GRHGNKGVVS KILPKEDMPF LPDGTPIQVV
LSPLGVPSRM NVGQILETSL GWLAMLTNRW FATPVFDGAK EGDILPELYK ARKKFGLEMG
DFEENPSGKV ILRDGRTGKE FDHPILVGYM YVMKLIHIAR DKIHARSTGP YSLIHQQPLG
GKAQFGGQRF GEMEVWALEA YGAAHTLNEM LTVKSDDIRG RNEVYKAIMK GKNIPEPGLP
ESFKVLVREL RGIALDVRVY DDEGNEIDIE KL
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