| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmel_0501 |
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| Symbol | |
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| ID | 5298198 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermosipho melanesiensis BI429 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009616 |
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| Strand | - |
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| Start bp | 528996 |
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| End bp | 533945 |
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| Gene Length | 4950 bp |
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| Protein Length | 1649 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 640768762 |
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| Product | DNA-directed RNA polymerase, beta' subunit |
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| Protein accession | YP_001305753 |
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| Protein GI | 150020399 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGGGTT CAACTTTTAA GAGAAAAATT TCTAAAGTTA CGGTTAAAGT TGCCTCGCCA
GAAGTAATAA GAAGCTGGTC AAGTGGTGAG GTCAAAAAAC CCGAAACCAT AAACTATAGA
ACCTTTAAAC CAGAAAAGGA TGGGCTATTT TGTGAAAAGA TATTTGGTCC TACGAAAGAC
TACGAATGTG CTTGTGGAAA GTATAAAGGA AAGAAGTATG AAGGTACAGT ATGTGAAAGA
TGTGGAGTTA GAGTAGAATC AAAAGAAGCA AGAAGAAAAC GAATGGGGCA TATTGACTTA
TTTGCTCCTG TGGTCCATGT TTGGTATTTA AAAAGTAGTC CAAGTATACT TTCATCACTT
CTTGGTATTC AGGCAAAAGA GTTGGAGAAT GTAATATATT ACGGTGGTAA AAGAATAATA
GAGAAGATAT TGATAGTAAC TAATCCCAAA GATACAGATT TCATAAAGGG TTCGTTACTT
TATCAAACAG AATATGAAAT ATACAATCAA AAATTGGATT TTGAAGTTAT GCCTGGAGTT
ATTATTAAAT CACCTGTAGC TCCTGTAATA AGTAGTATAT CTGGTGAAGT AAAAATAAGA
CACGAAAAGA CACATACTGA CAGAGAAATT ACTTGGGTAG ATGTTAGAAA GATCTCAAGA
GCAGAGCATA GGGTATACAA TGGAATGGTT TTGAATGTAA AAAATGGGGA TTATGTGAAC
CAAGGTGATG AGATTGTTTC GGAAATGCAA ATTGACCCAA TTTATGCTCC TTTTGATGGA
ACAGTTGAGA TAGATGAAAT ATCGAATACC ATTACAATAA AGCCTTTAAC AACAAGTAAA
GATATGCCAG TTACCTTCTC GTTGCCATAT GGTGTTAAAC CTGTAGTTCC TAATAATAGC
AAGGTAAAAA AAGGTGATCA ATTAACAAAT GGAACAGTTT TACCAGCTGT AATAGCATCT
GTTAGTGGGA ATATAAGCTT TGGAAAGGAA CTTAATGTAA GACCTCTAGA AGATGGAAAG
TACGAGGTAT TAACAAGTGG AAGTGTGTAT GTAGAAAATG TTGTGGAGGA AAAGCATTAT
CCATTATTTG AAGGGGCATT TGTTTACGTA AAAGATGGTG ATGAAATTTC AGAAGGTCAA
ACAATAGCAG ATAGATTTTT ATTTGAAGAT GAGTATTTAA CACTTGATGA GTACAAAATT
TTCGAGCAAC ATTATCCTGC AATGTTTACA GCAGAATCGG AAGTTGAAAA TGATAGACCC
ATAGTGGTAA TCACAGAAAT TGATGATGAA GTTTCTGTTG AGACAGGGCT AAAGATAGGT
GATATAATAA CTGATCACCA ATATAGTGCG TATAGAACGC TGTATAATGA TAAAATTGAG
GCGGATTCTG GAGCCTCTGC TATAAAGAAG CTTTTACAAA AATTAGATCT TGAAAAGTTG
AAAGCAGAAA TCGAATCAGA ATTAAAAAAG GTCTCTAAAA GCAGTGGAAG GGCAAAAAAA
CTTCTTAGAA GATTAAAAAT TGTAAAAGAT TTGTTAAAGA GCGAAACGAA ACCTGAATGG
ATGATACTTG AAGCTATTCC AGTTGTTCCA CCTGACATTA GACCGATGAT ACAGGTCGAA
GGTGGAAGGT TTGCCACTAC AGATTTGAAT GATTTGTACA GAAGGGTTAT AAACAGAAAC
AACAGATTGA AAAAACTTTA TGAAATGAAT TCTCCGGAGA TAATTATAAA AAACGAAAAA
AGGATGCTAC AAGAAGCAGT AGATAGTCTA ATATACAATG GAAGAATGGG AAAAGCTGTA
ACGGATAGAA ATGGAAGGGC ATTAAAATCA CTAACAGACC TGCTTAAAGG TAAAAAAGGA
AGGTTTAGAA GAAATCTACT TGGTAAGCGT GTGGACTATT CTGGACGTGC TGTAATAGTC
GTTGGGCCTC ATCTAAAGAT TCATGAATGT GGGCTTCCAA AGAAAATGGC TATGGAATTA
TTCAAGCCAT TTGTATTGGC GGAACTCTTA AATAAAGATG ATGAAACAAG TAAAACTGCT
AGGAAGATGA AAAAGGCAAT TATTGAAAAG GAAATGCCTC AAGCATATGA AGTACTTGAA
GAAATAATAA AGGGTCACCC GGTCCTTCTA AATAGGGCAC CTACATTGCA TAGGATGTCA
CTTCAGGCAT TTGAACCAAA GTTAATTGAA GGTAATGCAA TACAACTTCA TCCACTTGTG
TGTCCACCAT TTAACGCAGA CTTTGATGGG GACCAAATGG CTGTTCATGT GCCATTGTCT
GCTGCAGCAC AGGCTGAGGC AAAATTCTTG ATGCTTTCAA GATACAACAT AATTTCACCT
GCACATGGAA AACCAATATC TATGCCTGGT AAAGATATTG TTGCAGGTGT CTATTATCTT
ACAATGGTTG GAAAAGATTA TGATAAGGTT CAAAAAGAAA ACATAAAATG GAAATTTTCT
TCCATTGATG AAGCAGAACT TGCATATGAA TTTGGTCATA TAAGGCTTCA CGATCCAATA
TTGGTAAAAG TTGATGACAG AGTTATAAAA ACCACATATG GAAGATTAGT ATTTGCAAAT
ATCGTTCCAA GAGAATTTAG AGATTATAAC AAAACTTATG GCAAAGGCGC AATAAAAGAC
TTAGTATATA AGACGTTTAA GAAATACGGT GTTGATAGAA CCGCTGATCT ATTGGATGAT
ATAAAAGATT TAGGGTTCCA CTATGCTACG ATATCAGGGC TTACGGTAAG TATAACCGAT
TTTTACATTT CCCCAGAAAG GCGAAGAATA ATAGATGAAG CAAAGAAGAA GATATCAGAA
GTAGAAGAAT TATTTGCATT AGGATTTCTT TCCGATGAAG AAAGATACAG AGAAACAATA
AAGATTTGGG CAGATGCAAC TGAAAAGGTG CAAGATGCTA CATTTGAATA CATAGGAAAA
GATCCATTTA ACCCAGTGTA TATAATGGTA GATTCTGGGG CGAGGGGTAA CAAAGACCAA
CTTAAACAAC TTGCTGGTAT GCGTGGTCTA ATGGCTGATC CTTCTGGAAG AACAATCGAG
ATTCCAATTA TTTCAAACTT TAGAGAAGGG CTTTCTGTTT TGGAATTCTT CATTAGTACA
CACGGTGCAA GAAAAGGTTC TGCAGATACA GCTCTTAGAA CAAGTTCTGC TGGTTATTTG
ACAAGAAGAC TTGTAGATGT GGCTCAATCT GTTGTAATAA CTACAACTGA CTGTGGTACT
GAAAACGGAG TAAGGGCAAC CGTGTTAAAG AGTAGTGATG GATTAACAGT TGAAAAGTTA
GAAGATTTCT TATTTGGTAG GGTCCTTGCA AAAGATGTAT ACGATCCAAA AACAAATAGT
GTATTAGTAA ATCCAGAAAA TGGTAAAGAA TACACCAGAG ATACAATGAT CGATGATGAT
GATGCAAAAT TCTTGGGGAA TTATTCCGTT AGAATACCAG TTTCAAGAGA GCTTGAAATT
AATCTTACAA ATCCTGAACT TCCGGAAAAT TATTGTGAGT TAATTACAGA CTTTATTTAC
GATGGTGTAC ATTACGATGA AGGAACAGAA GTGAATTGGG ATATAATTAG AAAGGCTAAA
AATTCAGGGC TTGAAAAATT AACAGTGAAA GAATATCCAA TTGTAGGAAA AGTTTCTGTG
GAAACAGTGG TAAGTCAAAA AGATATAAAA CAACTAGTAG TAGATGAGGA ATTGATAATG
CCAACTACTG CAAAAATTTT AGAAGGACAT AACGTTGAAT CCGTACAGGT AAGACCAGAA
ATTATTGTAA GATCCGTGCT CACGTGTGAA GCTGAACATG GCGTTTGTTC AAAGTGTTAC
GGAATGGATC TTTCCAACCA TAAAATTATA GGTGTAGGAG AAGCTGTTGG TGTTGTTGCG
GCACAATCAA TAGGTGAACC AGGTACTCAA CTTACTATGA GAACATTCCA TACAGGTGGT
ATTGCAACAA CTGCAGATAT CACACAAGGG CTTCCAAGAG CGGAAGAACT ATTTGAGGCA
AGGAAGAAAT TAAAAGAACC TGAAGGTATA TTTTCAAGGG TGAAAGGATA TGTAAAAGAT
ATAGTAGAAG ATGAAACAGG AAAGAAAAAG GTGTACATAG AAGATGAAGC AGGAGACATC
CACGAATATG ATATACCAAC AAAAGTGAAG GTTTCAGTAA ATAAAGGGCA AAAAATACTT
CCTGGTCAAT CGCTATCAAC TGGTGCAATT AGACCTAGAA AGATACTTGA AACACTAGAT
GTGGATACAA CGGCGTTGTA TCTATTGAAG GAAATCAAAA AGGTCTATGT GGAACAGGGT
GTTGATATTC ACGATAAACA TTTTGAGATT ATAATAAAAC AAATGCTTGA CAAAGTAGAA
GTAATCGATC CAGGAGATAC AGATTACTTA CCAGGAGATC TTTTAAGGCT TCAAATGGTT
AAAAGAATTA ACAAACAGAT TTTAGAAGAA AATGTACACG TTGAAACAAA TAGGAAACGC
GTGATTGGAA AAATATTACA TCAACATCTA ATAGCGGAAG ACGAAAATGG AGAAATTGTG
GAAATAGCCC CTGAAGGTGT TGAAGTTACG GAAGAAATAT TGGAAAAGGC TATAAAATCT
GGTATCAAAG AAATTATTGT AAAAAATGGT GATGGAGAGA TAGTTACTTA CCAGATTCTT
CCAAAAGAGC CTATAAAATA CAGAAGAAGA TTGCTTAGGA TTACAAAGGC TTCGCTTGAA
AGAGTTGGTT GGTTAAGTGC GGCAAGTTTC CAACAAACAC CACAAGTGTT AACGGAAGCA
GCAATAGAGG GATCAGTAGA TCATCTCTTG GGATTAAAGG AAAACGTAAT TGTTGGGCAA
CTAATCCCCG CAGGAACAGG TCTGGATATG TTTGCAAATA TTCAAATAGA AGAGACGCCG
AGGCTTGCTC AAAAAGAAAA AATGGCATAA
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| Protein sequence | MMGSTFKRKI SKVTVKVASP EVIRSWSSGE VKKPETINYR TFKPEKDGLF CEKIFGPTKD
YECACGKYKG KKYEGTVCER CGVRVESKEA RRKRMGHIDL FAPVVHVWYL KSSPSILSSL
LGIQAKELEN VIYYGGKRII EKILIVTNPK DTDFIKGSLL YQTEYEIYNQ KLDFEVMPGV
IIKSPVAPVI SSISGEVKIR HEKTHTDREI TWVDVRKISR AEHRVYNGMV LNVKNGDYVN
QGDEIVSEMQ IDPIYAPFDG TVEIDEISNT ITIKPLTTSK DMPVTFSLPY GVKPVVPNNS
KVKKGDQLTN GTVLPAVIAS VSGNISFGKE LNVRPLEDGK YEVLTSGSVY VENVVEEKHY
PLFEGAFVYV KDGDEISEGQ TIADRFLFED EYLTLDEYKI FEQHYPAMFT AESEVENDRP
IVVITEIDDE VSVETGLKIG DIITDHQYSA YRTLYNDKIE ADSGASAIKK LLQKLDLEKL
KAEIESELKK VSKSSGRAKK LLRRLKIVKD LLKSETKPEW MILEAIPVVP PDIRPMIQVE
GGRFATTDLN DLYRRVINRN NRLKKLYEMN SPEIIIKNEK RMLQEAVDSL IYNGRMGKAV
TDRNGRALKS LTDLLKGKKG RFRRNLLGKR VDYSGRAVIV VGPHLKIHEC GLPKKMAMEL
FKPFVLAELL NKDDETSKTA RKMKKAIIEK EMPQAYEVLE EIIKGHPVLL NRAPTLHRMS
LQAFEPKLIE GNAIQLHPLV CPPFNADFDG DQMAVHVPLS AAAQAEAKFL MLSRYNIISP
AHGKPISMPG KDIVAGVYYL TMVGKDYDKV QKENIKWKFS SIDEAELAYE FGHIRLHDPI
LVKVDDRVIK TTYGRLVFAN IVPREFRDYN KTYGKGAIKD LVYKTFKKYG VDRTADLLDD
IKDLGFHYAT ISGLTVSITD FYISPERRRI IDEAKKKISE VEELFALGFL SDEERYRETI
KIWADATEKV QDATFEYIGK DPFNPVYIMV DSGARGNKDQ LKQLAGMRGL MADPSGRTIE
IPIISNFREG LSVLEFFIST HGARKGSADT ALRTSSAGYL TRRLVDVAQS VVITTTDCGT
ENGVRATVLK SSDGLTVEKL EDFLFGRVLA KDVYDPKTNS VLVNPENGKE YTRDTMIDDD
DAKFLGNYSV RIPVSRELEI NLTNPELPEN YCELITDFIY DGVHYDEGTE VNWDIIRKAK
NSGLEKLTVK EYPIVGKVSV ETVVSQKDIK QLVVDEELIM PTTAKILEGH NVESVQVRPE
IIVRSVLTCE AEHGVCSKCY GMDLSNHKII GVGEAVGVVA AQSIGEPGTQ LTMRTFHTGG
IATTADITQG LPRAEELFEA RKKLKEPEGI FSRVKGYVKD IVEDETGKKK VYIEDEAGDI
HEYDIPTKVK VSVNKGQKIL PGQSLSTGAI RPRKILETLD VDTTALYLLK EIKKVYVEQG
VDIHDKHFEI IIKQMLDKVE VIDPGDTDYL PGDLLRLQMV KRINKQILEE NVHVETNRKR
VIGKILHQHL IAEDENGEIV EIAPEGVEVT EEILEKAIKS GIKEIIVKNG DGEIVTYQIL
PKEPIKYRRR LLRITKASLE RVGWLSAASF QQTPQVLTEA AIEGSVDHLL GLKENVIVGQ
LIPAGTGLDM FANIQIEETP RLAQKEKMA
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