Gene Tmel_0458 details

Gene Information

• Locus tag: Tmel_0458
• ID: 5297499
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thermosipho melanesiensis BI429
• Kingdom: Bacteria
• Replicon accession: NC_009616
• Strand: +
• Start bp: 481856
• End bp: 483847
• Gene Length: 1992 bp
• Protein Length: 663 aa
• Translation table: 11
• GC content: 33%
• IMG OID: 640768719
• Product: alpha amylase, catalytic region
• Protein accession: YP_001305710
• Protein GI: 150020356
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG0366] Glycosidases

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTAAAAG AGTTGGAAAA ATATCTAAAA GCCAAGATAA CCGGTCACAA AAATTATGCT 
ATACCAAAAC TTTGGATTAA AGGTTATGAG TATTTATACG GTGACATCTT TGAAGAAAAA 
GGAGAAAATC TTTTCGTAGA TCCTTACGAA TTTTTCTTTA AAGTTATCTC GCATATAAAT 
TCACAAAGGG AAAAAATAGA TTACTCAAAA CCAATTTCTT ACCACTCAAA AGAAAAAAAT 
TGGGAAAAAA ATGCAATAAT GTATGGAACA CTCCCAAGGA TGACTACTTC TTTCAACCAC 
AAAGGTTTTG GAAATTTTGA AGAAATCGAT ATTCTGGGTT TTAAAGAATC TGGAACATTT 
TTAAAGATGA TAGCGCTACT TCCGTATTTA AAAAATTTTA ATGTAAATAC AATCTATATG 
CTTCCAATAA GTAAAACAAG CGATTTGTTT AAAAAAGGAA GTATTGGCTC ACCATACGCA 
GTAAAAAATC CACTAGAGTT AGACGAGTCA TACCACGATC CACTCCTTGC AGATTTCTCT 
GTGAAAGATG AGTTTAAAGC ATTGGTAGAA GCCGCACATA TCCTTGGCAT GAGGGTTGTT 
CTTGATTTTA TACCACGTAC CGCTTCAAGA GATTCTGATC TTATTAAAGA ACACCCAGAT 
TGGTTTTACT GGATTAAAAT TGATGATTTA GCAGATTACA AACCACCGCG TGTCGATGAA 
CTTTCTTTCA AAATACCCGA TAAAGAAGAT ATCCCCGTTT TGTATAGAAA TACAGAGGTT 
AGAAAACACC TAAATCGGTT TGTTGATTCA CCAGATAAGA TAGATCCAAA AAAATGGGCT 
AAAGTAAAAA ATATGCCTGG AAACATACTC GTTAATATAA TCAGAGAATT TGAATTGGTA 
ACCCCTCCAG GTTTTTCTGA CTGGATAAAC GATCCACAAC CAACGTGGGA CGATGTAACC 
TTTCTAAGAC TTTACCTTGA CAACCCAATT GATGCACAAG AATATATTCC AGAAGATCAA 
AAACCATATA TATTGTTTGA TGTTATAAAA TCAAGCAAGT TTCCCGGGAG TATACCTAAT 
AAAGATCTTT GGGAATATAT TTCCAACATT ATTCCAAATT ACCAGAAAAA GTTTGGAATA 
GACGGTGCAA GAATAGATAT GGGACACGCA CTCCCTTCAA AGCTACAAGA GATGATAATA 
AAAAAAGCAA GGGAAATAGA TCCATTCTTT GTTTTCATAG CAGAAGAGCT AGAAATGGAT 
AATGACATAA AGGCAAAAGA TGATGGTTAC AATGTTATAC TAGGCAATTC CTGGTATGCA 
GCGCCAAGAA AAGAGGAAAT GTACAAATTA CTAGAAGAAA AAGCTAAAAA TTTAGCAATT 
CCATTTATTG CCTCTGTTGA AACACCAGAT ACACCAAGAA TAAGCACAAG AGAATTTGGT 
GAAAAACTAA AATATCTTGC AACATTTTTG CTTTATTTTT CACCAAATGG TATTCCTTAT 
ATAAACTCTG GACAAGAAAT AGGTGAAATA CAACCAATGA ATTTAGGGCT TGATAATACA 
GTCTGGGGAA AAACTGTTCT CCCACCTGAT GATGAATTTT ATGGAAAGCT TGCATTTTTC 
GATCATTATG TGCTCCATTG GAATGATTAT GATGAAAAGC TTTTTGAATT TTTAAAGACC 
TTACTATTTT TAAGGAAAAA ATACAATGAT TTTGTTTTGA ATGGTGAATT CAAATATGTT 
TATTTTAACT ATCAAGATGG ATTTTTGGCA AATTATTCTT ACTGGGTCGA AGATAAGGGA 
CTAATCGTAG TTGGAAACTT AGACCTATCG TGGGAAAGAG CTTTTGATAT ATACTTAGAA 
AATACTGCCG AAAAAACCTT AAATGTAAAA AGTGTAAAGA TTTGGGATGG TGAAGAAAAA 
ACTTATGAGC CTCAAAAAAT ACTCAACTTA AAACTTGCCC CAGGAGGTTT TGCTTTAATA 
ATTATTAATT AG 

 

Protein sequence

MLKELEKYLK AKITGHKNYA IPKLWIKGYE YLYGDIFEEK GENLFVDPYE FFFKVISHIN 
SQREKIDYSK PISYHSKEKN WEKNAIMYGT LPRMTTSFNH KGFGNFEEID ILGFKESGTF 
LKMIALLPYL KNFNVNTIYM LPISKTSDLF KKGSIGSPYA VKNPLELDES YHDPLLADFS 
VKDEFKALVE AAHILGMRVV LDFIPRTASR DSDLIKEHPD WFYWIKIDDL ADYKPPRVDE 
LSFKIPDKED IPVLYRNTEV RKHLNRFVDS PDKIDPKKWA KVKNMPGNIL VNIIREFELV 
TPPGFSDWIN DPQPTWDDVT FLRLYLDNPI DAQEYIPEDQ KPYILFDVIK SSKFPGSIPN 
KDLWEYISNI IPNYQKKFGI DGARIDMGHA LPSKLQEMII KKAREIDPFF VFIAEELEMD 
NDIKAKDDGY NVILGNSWYA APRKEEMYKL LEEKAKNLAI PFIASVETPD TPRISTREFG 
EKLKYLATFL LYFSPNGIPY INSGQEIGEI QPMNLGLDNT VWGKTVLPPD DEFYGKLAFF 
DHYVLHWNDY DEKLFEFLKT LLFLRKKYND FVLNGEFKYV YFNYQDGFLA NYSYWVEDKG 
LIVVGNLDLS WERAFDIYLE NTAEKTLNVK SVKIWDGEEK TYEPQKILNL KLAPGGFALI 
IIN