Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tmel_0417 |
Symbol | |
ID | 5297713 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thermosipho melanesiensis BI429 |
Kingdom | Bacteria |
Replicon accession | NC_009616 |
Strand | + |
Start bp | 440076 |
End bp | 440807 |
Gene Length | 732 bp |
Protein Length | 243 aa |
Translation table | 11 |
GC content | 30% |
IMG OID | 640768679 |
Product | pseudouridine synthase |
Protein accession | YP_001305670 |
Protein GI | 150020316 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 31 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAGGAG TTGATAATAT TAAATTACAA AGGATTCTCC AAATATGTGG CTTTGCAAGA AGAAAAGCAG ATGAACTTAT ATTTTCAAAA AAGGTAAAAG TTAATGGTAA AATAGTTACC AAACCCTGGT TTGATGTAAA AGTAGATGAT GAAATAACCG TAGAAGGAAA AAAGTTTACA CTTCCAAAGT TTGAATATTA TGTTTTACAC AAACCAAAAG GTTATGTAAC AAGTCTATAC GACCCAAAAG AGAAAAACAC GATAAAAGAG TTTTTCAAAG ATAAACCTTT AAAACCAGCT GGAAGACTGG ATAAAGACGT TTCTGGTGTC TTAATATTAA CCAATGATGG AGATTTAATT GATGTTTTAA CAAATGCAAA ATATGGAGTA AAAAAAGTTT ATATAGCAAA AATAACTGGA AGGGTTAAGT TTGAAGACCT TCTTTCTCTA AAAAAAGGCA TATACGATAA AGGTGACTTT TTAAAACTTG AACACTTTGA CATCCTAGAA CAAGGATTCA ACTATTCAAC AGTAAAGGTA GAAATGATAA AAGGAAAAAA ACATGAAGTA AAAAGACTCT TTGAGAAAAT AGGTCATAAA GTTTTAGAAT TAAGAAGAAT AAAACACGGT CCTGTAAGTA TTTCTCTTGC TCCAAATCCC GGGGATATGA GAAAGATAGA AGGAGAAATT CTAAAGAAAC TTTTAAAATT AAAAAGGAGG AAAAAAGCAT GA
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Protein sequence | MKGVDNIKLQ RILQICGFAR RKADELIFSK KVKVNGKIVT KPWFDVKVDD EITVEGKKFT LPKFEYYVLH KPKGYVTSLY DPKEKNTIKE FFKDKPLKPA GRLDKDVSGV LILTNDGDLI DVLTNAKYGV KKVYIAKITG RVKFEDLLSL KKGIYDKGDF LKLEHFDILE QGFNYSTVKV EMIKGKKHEV KRLFEKIGHK VLELRRIKHG PVSISLAPNP GDMRKIEGEI LKKLLKLKRR KKA
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