Gene Tmel_0417 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTmel_0417 
Symbol 
ID5297713 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermosipho melanesiensis BI429 
KingdomBacteria 
Replicon accessionNC_009616 
Strand
Start bp440076 
End bp440807 
Gene Length732 bp 
Protein Length243 aa 
Translation table11 
GC content30% 
IMG OID640768679 
Productpseudouridine synthase 
Protein accessionYP_001305670 
Protein GI150020316 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases 
TIGRFAM ID[TIGR00093] pseudouridine synthase 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAGGAG TTGATAATAT TAAATTACAA AGGATTCTCC AAATATGTGG CTTTGCAAGA 
AGAAAAGCAG ATGAACTTAT ATTTTCAAAA AAGGTAAAAG TTAATGGTAA AATAGTTACC
AAACCCTGGT TTGATGTAAA AGTAGATGAT GAAATAACCG TAGAAGGAAA AAAGTTTACA
CTTCCAAAGT TTGAATATTA TGTTTTACAC AAACCAAAAG GTTATGTAAC AAGTCTATAC
GACCCAAAAG AGAAAAACAC GATAAAAGAG TTTTTCAAAG ATAAACCTTT AAAACCAGCT
GGAAGACTGG ATAAAGACGT TTCTGGTGTC TTAATATTAA CCAATGATGG AGATTTAATT
GATGTTTTAA CAAATGCAAA ATATGGAGTA AAAAAAGTTT ATATAGCAAA AATAACTGGA
AGGGTTAAGT TTGAAGACCT TCTTTCTCTA AAAAAAGGCA TATACGATAA AGGTGACTTT
TTAAAACTTG AACACTTTGA CATCCTAGAA CAAGGATTCA ACTATTCAAC AGTAAAGGTA
GAAATGATAA AAGGAAAAAA ACATGAAGTA AAAAGACTCT TTGAGAAAAT AGGTCATAAA
GTTTTAGAAT TAAGAAGAAT AAAACACGGT CCTGTAAGTA TTTCTCTTGC TCCAAATCCC
GGGGATATGA GAAAGATAGA AGGAGAAATT CTAAAGAAAC TTTTAAAATT AAAAAGGAGG
AAAAAAGCAT GA
 
Protein sequence
MKGVDNIKLQ RILQICGFAR RKADELIFSK KVKVNGKIVT KPWFDVKVDD EITVEGKKFT 
LPKFEYYVLH KPKGYVTSLY DPKEKNTIKE FFKDKPLKPA GRLDKDVSGV LILTNDGDLI
DVLTNAKYGV KKVYIAKITG RVKFEDLLSL KKGIYDKGDF LKLEHFDILE QGFNYSTVKV
EMIKGKKHEV KRLFEKIGHK VLELRRIKHG PVSISLAPNP GDMRKIEGEI LKKLLKLKRR
KKA