Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tmel_0352 |
Symbol | |
ID | 5297277 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thermosipho melanesiensis BI429 |
Kingdom | Bacteria |
Replicon accession | NC_009616 |
Strand | - |
Start bp | 364831 |
End bp | 365592 |
Gene Length | 762 bp |
Protein Length | 253 aa |
Translation table | 11 |
GC content | 26% |
IMG OID | 640768613 |
Product | CRISPR-associated Cas5 family protein |
Protein accession | YP_001305607 |
Protein GI | 150020253 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR02592] CRISPR-associated protein Cas5, Hmari subtype [TIGR02593] CRISPR-associated protein Cas5, N-terminal domain |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.00575907 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAAAGCCT TTTCTTTTGA GCTTAAAGGA GATATGGGTT TTTTTAAAAA AAATGATACA AATGCAACTG TATATGCCAC ATACAATTTT ATTCATAAAT TAAATCTTTT CGGTATTTTT GGAGCAATAT TAGGATTAGA AGGATACAAA AGAGACAAAA GTGGAAATTT TATGGAATAC TATGAGAAAT TTAAAAATTT TAAGGTAGCA ATAACACCTT TGTATAATAA ACCTCCGAAA AAAACTCTTG TTATATTTAA TAACTCAACA GGCCATGCTT CAAGAGAAGC TGGTGGGGTA TTGCAAATCA AAGAACAAGT TATAGTTGAA AGCATTGGAT ATAGAATATT TATACCATGT TTGGAGACAT TTACTGATGA AGAAAAAAAT GTATATGAAA AATTAGAGAA AATGGTAAAA AAGAATTATT CAGAATATCC TATTTATTTT GGGAAAAACG AGTTTTTAGC ATATTTTGAA AATTATTGTT CAATTGAACT TGAAAGGCTT GAATTTGAGG AATCAACCGT TAACTCTCTT GTAAGATTAA AAGATATTGA GTTTTTTAAA GAAAATTTAG ATGATATTGA ATTATTTGAA GAAGAAACAG ATTACATATC TATACTGGAA GAGTTACCAT ACGATTTTAA TGAAAATCAT TTGTATCTCA AAGATGTATT TGTTTTCACA AATAAAAAAT TAAGGTTAAA AAGAAAGGAA AATTTTTGGA GGACAAATAA TGAAGTTATT TATGTTTTCT AA
|
Protein sequence | MKAFSFELKG DMGFFKKNDT NATVYATYNF IHKLNLFGIF GAILGLEGYK RDKSGNFMEY YEKFKNFKVA ITPLYNKPPK KTLVIFNNST GHASREAGGV LQIKEQVIVE SIGYRIFIPC LETFTDEEKN VYEKLEKMVK KNYSEYPIYF GKNEFLAYFE NYCSIELERL EFEESTVNSL VRLKDIEFFK ENLDDIELFE EETDYISILE ELPYDFNENH LYLKDVFVFT NKKLRLKRKE NFWRTNNEVI YVF
|
| |