Gene Tmel_0352 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTmel_0352 
Symbol 
ID5297277 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermosipho melanesiensis BI429 
KingdomBacteria 
Replicon accessionNC_009616 
Strand
Start bp364831 
End bp365592 
Gene Length762 bp 
Protein Length253 aa 
Translation table11 
GC content26% 
IMG OID640768613 
ProductCRISPR-associated Cas5 family protein 
Protein accessionYP_001305607 
Protein GI150020253 
COG category 
COG ID 
TIGRFAM ID[TIGR02592] CRISPR-associated protein Cas5, Hmari subtype
[TIGR02593] CRISPR-associated protein Cas5, N-terminal domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00575907 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAGCCT TTTCTTTTGA GCTTAAAGGA GATATGGGTT TTTTTAAAAA AAATGATACA 
AATGCAACTG TATATGCCAC ATACAATTTT ATTCATAAAT TAAATCTTTT CGGTATTTTT
GGAGCAATAT TAGGATTAGA AGGATACAAA AGAGACAAAA GTGGAAATTT TATGGAATAC
TATGAGAAAT TTAAAAATTT TAAGGTAGCA ATAACACCTT TGTATAATAA ACCTCCGAAA
AAAACTCTTG TTATATTTAA TAACTCAACA GGCCATGCTT CAAGAGAAGC TGGTGGGGTA
TTGCAAATCA AAGAACAAGT TATAGTTGAA AGCATTGGAT ATAGAATATT TATACCATGT
TTGGAGACAT TTACTGATGA AGAAAAAAAT GTATATGAAA AATTAGAGAA AATGGTAAAA
AAGAATTATT CAGAATATCC TATTTATTTT GGGAAAAACG AGTTTTTAGC ATATTTTGAA
AATTATTGTT CAATTGAACT TGAAAGGCTT GAATTTGAGG AATCAACCGT TAACTCTCTT
GTAAGATTAA AAGATATTGA GTTTTTTAAA GAAAATTTAG ATGATATTGA ATTATTTGAA
GAAGAAACAG ATTACATATC TATACTGGAA GAGTTACCAT ACGATTTTAA TGAAAATCAT
TTGTATCTCA AAGATGTATT TGTTTTCACA AATAAAAAAT TAAGGTTAAA AAGAAAGGAA
AATTTTTGGA GGACAAATAA TGAAGTTATT TATGTTTTCT AA
 
Protein sequence
MKAFSFELKG DMGFFKKNDT NATVYATYNF IHKLNLFGIF GAILGLEGYK RDKSGNFMEY 
YEKFKNFKVA ITPLYNKPPK KTLVIFNNST GHASREAGGV LQIKEQVIVE SIGYRIFIPC
LETFTDEEKN VYEKLEKMVK KNYSEYPIYF GKNEFLAYFE NYCSIELERL EFEESTVNSL
VRLKDIEFFK ENLDDIELFE EETDYISILE ELPYDFNENH LYLKDVFVFT NKKLRLKRKE
NFWRTNNEVI YVF