| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmel_0311 |
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| Symbol | |
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| ID | 5297458 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermosipho melanesiensis BI429 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009616 |
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| Strand | - |
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| Start bp | 316780 |
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| End bp | 318321 |
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| Gene Length | 1542 bp |
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| Protein Length | 513 aa |
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| Translation table | 11 |
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| GC content | 29% |
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| IMG OID | 640768569 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001305568 |
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| Protein GI | 150020214 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0753033 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGCCGATAA AACCTGAAAT GGCAAAAAGT CAGAATTTAC CTGTGAAATT ACCGATTCTA
GTTGAGGATA TGCCACTTGT GACGGAAATT AACAAAATTC CTTTAGATGT TATATTAAGA
GGTCTTGAAG CCCAATATTC TGTTGAGAAA AGCGAATATT GGGCATCTTA TCTTGTTTAT
TTTTATTATG AAAAATTCAA GGAGCATTTA AATGCTCAAA ATTATGAAGA TGCAAGAGAA
ATTTTAGAAA AAGCAAAAAA TGTTTTGTAT GATTATAGAT ACCATTTTTA TTATGGTTTA
TTATTTTCAA AATTAGGAGA TTATGAAAAT GCAGAGGTTG AGCTAAAGCG TTCGCTTGCC
ATGAATCCAA ATTTTTATTT GGGATACTAT GAGTTGGGGA ATTTGTTGTA TTTAAAAAAG
GAATATGACG ATGCAATTCA AATGTATTTA AAGGCATTTG AGATTAACAA AGAGTTTTCT
TTACCATTAC TTAAGATGGG GGATGCTTAT TTTGAAAATG GCCAGTTTAA AGATGCAGAA
ATTGCATATA AAACAGCATT AAAGGTTGAA AAGCTATCTC AAATTTATCT TAGATTGGGT
GTCTTGTACA ATTCCATTCA AAAGTTTGAA AAAGCGGAAA AGATTTTCAG AGAAGGTTTA
TCTGTTGAAT ACAAACCGGA AATAGCGTAT AACCTAGCGT ATACTCTTTC AAGACTTGGG
AAACATTTCC AAGCTCTTCA AGTATTAAAA GAGTTGTCAA AAAATTTTCC ATCTACTGAA
GTGTACAACG AACTTGGACT TGAGCAGAAA TTATTTGGTA TGTACGAAGA AGCTTTAGAA
AATTTAGAAT TAGCTGGTGA AGAGTATAAG GAAAATTATT TAAAAGTACT ATTGTTTGTG
AAAGGTTATG ATGAATCTCT TTTAAGAGAA TTAGAAAAAT TTGATCCAGA ATATGTTAAT
TTTCTTAGAA CATTAAGTGG AGAGAAAGAA GAAATAGAAA ATAGACTTGA AAATATGAGT
TTTCCTTTTG GAGAATTAAA TTATTCATTT GAAATTACTG ATGAAATAGG GGAAGTGATT
TTAGAAGAAT TGGAAAATTA CATTTATTTG ACGTTTAAAG AAAAAATTGG GTTGATTATA
TCTAATGCGT ATATTGCTGG TGCCAATCCT ATATTGATAG AAAAGAACTT AGCTAGGACT
TCTTTATTAC TTTTCAACAA TGATGAGGCT ATTTCTTTCT ACAAGGTGTT TCAAATAATT
TACTTTGGTA GATTGTTTGA AAAAATGCTA TTTCAAGAAA TTATTGAAAG AGTTTTACAA
GAACTTTCCA AAGTTAATGT TATGCTATTT AGAAAAGCAT TTAAATTACT AGAAGAGGAA
AAAAAGTCAC TGGATGATTT TTGGGAAGAA TATTCAGAGC CAAAAAAACT TGCCGAGTTA
ACTTTGAAAT TAATAGAATT GTTGAGTTAT GAACCGACAA AACATGAAAT AAATGAAGAA
ACACTAGTTG GAAAAATTGC AAAAGTGATA CTTTCTCTTT GA
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| Protein sequence | MPIKPEMAKS QNLPVKLPIL VEDMPLVTEI NKIPLDVILR GLEAQYSVEK SEYWASYLVY
FYYEKFKEHL NAQNYEDARE ILEKAKNVLY DYRYHFYYGL LFSKLGDYEN AEVELKRSLA
MNPNFYLGYY ELGNLLYLKK EYDDAIQMYL KAFEINKEFS LPLLKMGDAY FENGQFKDAE
IAYKTALKVE KLSQIYLRLG VLYNSIQKFE KAEKIFREGL SVEYKPEIAY NLAYTLSRLG
KHFQALQVLK ELSKNFPSTE VYNELGLEQK LFGMYEEALE NLELAGEEYK ENYLKVLLFV
KGYDESLLRE LEKFDPEYVN FLRTLSGEKE EIENRLENMS FPFGELNYSF EITDEIGEVI
LEELENYIYL TFKEKIGLII SNAYIAGANP ILIEKNLART SLLLFNNDEA ISFYKVFQII
YFGRLFEKML FQEIIERVLQ ELSKVNVMLF RKAFKLLEEE KKSLDDFWEE YSEPKKLAEL
TLKLIELLSY EPTKHEINEE TLVGKIAKVI LSL
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