Gene Tmel_0261 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTmel_0261 
Symbol 
ID5297228 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermosipho melanesiensis BI429 
KingdomBacteria 
Replicon accessionNC_009616 
Strand
Start bp263742 
End bp265133 
Gene Length1392 bp 
Protein Length463 aa 
Translation table11 
GC content29% 
IMG OID640768517 
Productresponse regulator receiver modulated diguanylate cyclase 
Protein accessionYP_001305520 
Protein GI150020166 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.3078 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTAAAA AAATACTTGT GGTTGATGAT AGTGAGCTTT GGAGAAGATT TTTAAAGTAT 
GAACTAGAAA AGATGGGAAA TGAAGTTGAA GTTGCAGTTG ATGGTTTGGA TGGAATTAAC
AAGTTTTTTT CGTTTTTACC AGATGTTGTT ATAACAGATT ATCTTATGCC AAACATGAAT
GGAATTCATT TAACTAGGTT TATAAGATCA TATGCGGAAT TTGAAAATGT GGGAATAGTT
ATTTTAACTG CTGGAAATGA GACAATTAAT AAATTTTGGG CAAAGAAAAG TGGTGCAAAT
CTATATATAA AAAAGACGTT AGATAAGAAA GAGATTATAG AAAAGTTGAA AGGTTTTTTA
AACGAAAATT ATCATATTGA ATGGTCTAGT GAGGTGCTTA AAATTAGAAA AGAGCCTTTT
GGAGAGCTTG TTGATATACT AGAGGAAAAT CTAAGAAATG AATTGGTAAT TTCAGAAATC
TACAGTTTTT TAGAATATAT TCACGATGAA AGGTATTTAA TTGAATGCAT TTACAAACTA
TTTAAAGAAT TTTTTGAATT TAAATCACTT CACACCTTAA TTTTTAATGT TGAAAGTGAA
AGGATTTATT CTATTTCAGA TGATGAAAGG TCTTTTAATA GAAAAGAAAT TGAAAAAACT
TTAGAACTTT TATTGAAAAA ACCTGTTACA CCTGCAAAGA AAATATATAA TGGGAACTAT
GTAAAAAATG GAGAAACTCT CGAGGATTTT ATATCAGTTG TTATAGAATA CAAAAATGAA
GAGCAGGCAG CATTTTTAAT TGAAGGGTTA AAAAAGGAAA GAGATTTTTT AGAGACGATT
GTAGTAATAA AAAAGCCATT GGCTCTTGTG TTTAAACTTT TAAATGAATA CAACTTGAGT
AAGTCCAAAA CAGAGTTTGA TGAGTTAACC AAAGTATATA ACAGGGCGTT TATAATGGAG
AAATTAAAAG AGTTATTACA ATTATCTTTA AGACAGAAAA TCCCATTGTC AGTTGCCATG
ATAGATATAG ATGATTTTAA AAAGGTTAAT GATACTTATG GACATTTAAA AGGCGATGAA
GTTTTAAAAA AAGTTGCTCA AATAATAAGG GATAATTTGC GGGAAAGTGA TTATGTGGGA
AGATATGGCG GAGAGGAGTT TTTGGTAATT CTTCCAGGGA TCTCATGTAA TCAGGCAAAA
AAAGTATTGG AAAGAATTTT GGATAAAGTA AGAAACACAG ATTGGAAATC TTTGGGAGTG
AACAATGTGA CTTTTAGTGC AGGTTTATGT TGCAAGCCTG AGAAATCTAT GTTAGGCTTT
ATTAAGAGAG CAGATAAGAA TCTATATATT GCTAAAAAAA GAGGAAAAAA TCAAGTGTAT
GGAGGTGAAT AG
 
Protein sequence
MSKKILVVDD SELWRRFLKY ELEKMGNEVE VAVDGLDGIN KFFSFLPDVV ITDYLMPNMN 
GIHLTRFIRS YAEFENVGIV ILTAGNETIN KFWAKKSGAN LYIKKTLDKK EIIEKLKGFL
NENYHIEWSS EVLKIRKEPF GELVDILEEN LRNELVISEI YSFLEYIHDE RYLIECIYKL
FKEFFEFKSL HTLIFNVESE RIYSISDDER SFNRKEIEKT LELLLKKPVT PAKKIYNGNY
VKNGETLEDF ISVVIEYKNE EQAAFLIEGL KKERDFLETI VVIKKPLALV FKLLNEYNLS
KSKTEFDELT KVYNRAFIME KLKELLQLSL RQKIPLSVAM IDIDDFKKVN DTYGHLKGDE
VLKKVAQIIR DNLRESDYVG RYGGEEFLVI LPGISCNQAK KVLERILDKV RNTDWKSLGV
NNVTFSAGLC CKPEKSMLGF IKRADKNLYI AKKRGKNQVY GGE