Gene Tmel_0244 details

Gene Information

• Locus tag: Tmel_0244
• Symbol: smpB
• ID: 5296871
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thermosipho melanesiensis BI429
• Kingdom: Bacteria
• Replicon accession: NC_009616
• Strand: -
• Start bp: 248462
• End bp: 248905
• Gene Length: 444 bp
• Protein Length: 147 aa
• Translation table: 11
• GC content: 32%
• IMG OID: 640768500
• Product: SsrA-binding protein
• Protein accession: YP_001305503
• Protein GI: 150020149
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG0691] tmRNA-binding protein
• TIGRFAM ID: [TIGR00086] SsrA-binding protein

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 0.750258
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAATAA TTGCAACAAA CAAAAAGGCA TTCTCAGATT ATATAATTTT AGAAACTTAT 
GAAGCAGGAA TAGAGTTAAG AGGAACTGAG GTAAAGTCCT TAAGAGAGTC AGGTGCAAAT 
TTTAAAGATA GTTTTTGTAG GATAAAAAAC GGAGAAGTGT TTTTGTTAAA TCTAAATATT 
CCGCAATACA GGAATGGGAG TTTAAACAAT CATGACCCGG AAAGGCCCAG AAGGCTTTTG 
CTTCATAAGA AAGAGATACA TAGACTTCTT GGGAAAGTTA AAGAACAAGG ATTAACAATA 
ATTCCAACAA AGATATATTT TAATAATAGA GGGTTGGTAA AGGTTGAAAT TGCGGTGGCG 
AAAGGAAAGA AAAAATACGA TAAGAGAGAA GATATAAAGA AGAGAGAAAT TAATAGGAGA 
ATAAGGGAAT ATTTAAAGGG GTGA 

 

Protein sequence

MKIIATNKKA FSDYIILETY EAGIELRGTE VKSLRESGAN FKDSFCRIKN GEVFLLNLNI 
PQYRNGSLNN HDPERPRRLL LHKKEIHRLL GKVKEQGLTI IPTKIYFNNR GLVKVEIAVA 
KGKKKYDKRE DIKKREINRR IREYLKG