| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmel_0079 |
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| Symbol | |
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| ID | 5296927 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermosipho melanesiensis BI429 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009616 |
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| Strand | - |
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| Start bp | 83583 |
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| End bp | 85277 |
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| Gene Length | 1695 bp |
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| Protein Length | 564 aa |
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| Translation table | 11 |
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| GC content | 32% |
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| IMG OID | 640768330 |
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| Product | sigma-54 dependent trancsriptional regulator |
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| Protein accession | YP_001305341 |
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| Protein GI | 150019987 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAGTTAA TGAAATTTTA CAGAACGGTC CTTGAATCAA TTATTGAAGG AGTAATAATA
GTTGATAAAG ATGCGAAAAT TTTATATATA AACAAAAGAG CGATGCATAT ATTGAAATTA
AAAGAAGGAT TTATTGGGAA GCATGTAGCA GATGTAATTC CTAATACTAG ATTGCACATT
GTAGTACAAA CAGGAGTACC AGAAGTTGAT GAGGTACAAA ATGTTGGAGA AAATATAATA
ATAACCTCTA GGATGCCGCT TACAGATGAA TGTGGAAATA TTTTAGGAGC TGTTGCCGTA
TTTAGGGATA TAACAAGTAT GAGAAAACTT GCAGAAGAGA TTACCAATCT ACACCAGATA
GAAGCAAGAT TAAAGGCAAT TATTGATTCA ACATATGATG CTATTTCTGT TGCCGATGAA
AATGGATATA TTGTTTTGGT GAATAAGGCA TATACAAAGA TAACAGGACT TAAGCCAGAA
GAGGTAATTG GAAAACCTGC AACTGTTGAT ATAGCTGAAG GAGAAAGTAT ACATATGAAA
GTCGCAAGGA CTAAAAAGCC TATTTTTAAC GCTAGGTTAA AAGTAGGGCC ATTAAAAAGG
GAAGTAATAG TTAATGCTAT GCCTTTAATC GTAAGAGGAA AATTTAGTGG AAGTGTTGCG
GTTGTTCATG ATGTTTCAGA GATACTTGAA TTAACCAGGG AGTTAAATGA AGTAAAAAGA
TATATTAGGC AACTAAAAGC ACAATATACC TTTGATGATA TTATTGGAAA AAGTGAAAAG
CTTTTAATAG CAAAAGAGCA AGCAAAAAAG GTAGCTAAAA CGCCTGCAAC TGTTTTTCTT
AGAGGGGAAA GTGGAACTGG AAAGGAGCTT TTTGCACATG CAATCCATAA TGAAAGTAAT
AGAAAAAATA ATCCTTTCGT TACAGTTAAT TGTGCTGCCA TTCCTGAAAA TATGTTAGAA
ATAGAGTTAT TTGGATATAC AAAAGATACA TTTGGACAGA AAGGTTTGAT TGAAGAGGCA
GAAGGTGGCA CTTTATTTTT AGATGAAATT GGTAAGATGC CTATCTCGGT TCAAGCAAAG
ATATTACGGT TTATTGAAAA TAGAGAGTTT TTGCCTATAG GTTCTAATAG AGTAAAAAAA
GTTAATGTTA GAATAATTGC TTCTACAAAT ATGAATATAG AAGAACTTAT TAGAAAAGAA
CAATTTCTGA TAGATCTTTA TTATAGATTA AATGTATTTC CCATATATAT TCCGCCTTTG
AGGGAAAGAA AAGAAGATAT AGAGGAACTT GCAAAATTTC TTGCAAAAAA GATTGGAAGA
CAATACGGAA GAAATGTTGT AGATATTACG GATAATGCAG TTGAATATTT GAAAAAATAT
GATTGGCCTG GGAATATAAG AGAATTAGAA AATATCATTG GAAGGGCAAT AATTAATATG
GATATTGGTG AGACGATACT TGATAAAAGA CATATTCCTC TTTTATTTTT GGAGAATAAT
TCTATTTTGA AAAAAGAGGG ATCTTTAAGG TCAATGGTAG AAGATTTTGA AAGGAAGATG
ATTGAATCTT CTTTGAAAGA AAATAATGGA GACAGAACAT TAACTGCAAA AAAATTGAAG
ATTAGTTTGA GGACATTGTA TTACAAAATG GAAAGATATG GATTGTTGAA AAAGGGGGAG
AGATATGAAG CTTGA
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| Protein sequence | MELMKFYRTV LESIIEGVII VDKDAKILYI NKRAMHILKL KEGFIGKHVA DVIPNTRLHI
VVQTGVPEVD EVQNVGENII ITSRMPLTDE CGNILGAVAV FRDITSMRKL AEEITNLHQI
EARLKAIIDS TYDAISVADE NGYIVLVNKA YTKITGLKPE EVIGKPATVD IAEGESIHMK
VARTKKPIFN ARLKVGPLKR EVIVNAMPLI VRGKFSGSVA VVHDVSEILE LTRELNEVKR
YIRQLKAQYT FDDIIGKSEK LLIAKEQAKK VAKTPATVFL RGESGTGKEL FAHAIHNESN
RKNNPFVTVN CAAIPENMLE IELFGYTKDT FGQKGLIEEA EGGTLFLDEI GKMPISVQAK
ILRFIENREF LPIGSNRVKK VNVRIIASTN MNIEELIRKE QFLIDLYYRL NVFPIYIPPL
RERKEDIEEL AKFLAKKIGR QYGRNVVDIT DNAVEYLKKY DWPGNIRELE NIIGRAIINM
DIGETILDKR HIPLLFLENN SILKKEGSLR SMVEDFERKM IESSLKENNG DRTLTAKKLK
ISLRTLYYKM ERYGLLKKGE RYEA
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