| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmel_0077 |
|---|
| Symbol | |
|---|
| ID | 5297297 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermosipho melanesiensis BI429 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009616 |
|---|
| Strand | - |
|---|
| Start bp | 81513 |
|---|
| End bp | 82958 |
|---|
| Gene Length | 1446 bp |
|---|
| Protein Length | 481 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 32% |
|---|
| IMG OID | 640768328 |
|---|
| Product | glycogen/starch synthase, ADP-glucose type |
|---|
| Protein accession | YP_001305339 |
|---|
| Protein GI | 150019985 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0297] Glycogen synthase |
|---|
| TIGRFAM ID | [TIGR02095] glycogen/starch synthases, ADP-glucose type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGTTG CTCTTATTTC TTATGAAGTG TACCCTTTTG CAAAAGTGGG GGGACTTGCC
GATGTGGTTG GAGCACTTCC TAAGTATTTA GAAAAAGCTT CTGTAAAACC AATTGTAATA
ATGCCTAAAC ATAAAGTTGT AGAAAAAAAT GCGAGAAATT TAGATAAAGT AATGGAAAAG
ATTAGTATTC CATACCTAAA GACCGATGAG ACCTTTGATA TTTACAAAAC CATTGTGCCT
AAAACAAATG TTCCTATATA TTTTGTAGCA AATGAATATT ATTTTTCGGC AGAAAATGTA
TATGAAGGAC CAGATCTAGC TGAACAGGCT ATATATTTTT CTGCTGCAGT ACTTGAAACT
TTAAAAGTGT TAGATTTGCA AATGGATGTT TTACATGTTA ATGATTGGCA AACAAGTTTA
ATACCAGTTT ATTTAAAAAC GCTTTACAAG GAAGATGAGT TTTATGCAAA AACGGTTACA
CTTTTGACGA TTCACAACTT GGGTTATCAA GGTATTTTTG ACAGCAAATA TATGGAATTT
TCGGGCTTGC CGAATTATTT GTACAATATA GATGGAATAG AATTTTATGG GAAAATTAAT
TTTTTGAAAG GTGGTATTCT TTACTCGGAT ATTATAAATA CAGTAAGTCC AACTTATGCA
AATGAGATTC AAACTAAGGA ATATGGAGAA AAGCTTGATG GTGTATTAAG ACTTAGAAGT
GCAGATTTAT ACGGTGTTTT GAATGGAATA GACTATGATG AATACAATCC AGAAACTGAT
AAGAGGATTT TTGTAAACTA TTCTTTGGAT AACATAGATA AAAAGTATGA GAATAAGGTG
AGGTTACAAA AAGAGTTAGG ATTACCTGAA GATAGACGTA TACCTATGAT TGGTATGATA
ACAAGACTTG TTGATCAAAA GGGATTGGAT ATTTTATCTG AAGTTCTTAG ATATATAGTG
AATTATGATA TTCAATTTGT AATTTTAGGC ACAGGTGATG AAAAGTACGA AGAGATGTTT
AAAAAAGCTC AACAGGAATT TCCAAAGAAT GTTTCTGCTA ATGTGAAATT TGATATAAAT
CTTGCACAAA AGATTTATGC GGCAAGTGAT ATGTTCTTGA TGCCTTCAAG ATATGAACCT
TGTGGGTTAG GACAAATGTA CAGCTTAAGG TATGGAACGA TACCTATTGT AAGGTATACA
GGTGGACTTG CGGATACTGT TTTGGAATAC GATGAAAATA AGATGACGGG AAATGGCTTT
GGGTTTGTTG AGTATGATTC ATCAAAATTA CTCAAAGCTG TAGCAAGGGC TTTGGATTTT
TACAAAAATA AAAAAGTTCA TTGGAAAAAA CTTATTGATA ATGCAATGAA AACCGATCTT
TCATGGGAAA GATCTGCAAA AGAATATGTT AAATTATATA ACAAAGCAAT GAGTAAAAGA
ATTTAA
|
|---|
| Protein sequence | MKVALISYEV YPFAKVGGLA DVVGALPKYL EKASVKPIVI MPKHKVVEKN ARNLDKVMEK
ISIPYLKTDE TFDIYKTIVP KTNVPIYFVA NEYYFSAENV YEGPDLAEQA IYFSAAVLET
LKVLDLQMDV LHVNDWQTSL IPVYLKTLYK EDEFYAKTVT LLTIHNLGYQ GIFDSKYMEF
SGLPNYLYNI DGIEFYGKIN FLKGGILYSD IINTVSPTYA NEIQTKEYGE KLDGVLRLRS
ADLYGVLNGI DYDEYNPETD KRIFVNYSLD NIDKKYENKV RLQKELGLPE DRRIPMIGMI
TRLVDQKGLD ILSEVLRYIV NYDIQFVILG TGDEKYEEMF KKAQQEFPKN VSANVKFDIN
LAQKIYAASD MFLMPSRYEP CGLGQMYSLR YGTIPIVRYT GGLADTVLEY DENKMTGNGF
GFVEYDSSKL LKAVARALDF YKNKKVHWKK LIDNAMKTDL SWERSAKEYV KLYNKAMSKR
I
|
|---|
| |