| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmel_0040 |
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| Symbol | |
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| ID | 5297243 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermosipho melanesiensis BI429 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009616 |
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| Strand | + |
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| Start bp | 43659 |
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| End bp | 44462 |
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| Gene Length | 804 bp |
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| Protein Length | 267 aa |
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| Translation table | 11 |
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| GC content | 31% |
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| IMG OID | 640768290 |
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| Product | HAD family hydrolase |
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| Protein accession | YP_001305304 |
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| Protein GI | 150019950 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0647] Predicted sugar phosphatases of the HAD superfamily |
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| TIGRFAM ID | [TIGR01460] Haloacid Dehalogenase Superfamily Class (subfamily) IIA |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00579975 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGACAATAA TAACAGATGA TGCCTTGGAA AAATTGAAAA AGGTAAGGTT GTTTGTTTTA
GATATAGATG GAACATTTTC ATTAAGTGGA AAGTTACTCC CAGGATCTAT TAGTTTTGCG
AAAAAAGTTA AAAATGCAAA CAAAAAATTT GTTTTTTTGA CAAATAACTC CAATAAATCT
ATTGAAACTT ATCTTAAAGA ATTTTCAAAC GATAAAATAA AGATCTCTGC TTCCCAAATA
TTCACTGCCG GGATTGAAAC TGCAGAATAC CTCTACGAAA AATTTGGACC AAAAAAAATA
TACATTGTAG GAAACAATGA AATAAAAGAT ATTTTCAAAA AAGCAGGGCA TACAATAGTA
GAAAACAATC CAGATATTGT TGTTGTAACA TTCGATACCA CACTTAATTA TGAGAAACTT
GCAAAGGCAT CAATTTATGT CTCAAAGGGA AAACTCTTTG TTCTAACAAA TCCGGATTTA
AATTGTCCTT CTGAAATAGG ACCAATTCCA GATACCGGAG CAATAGCAAG TATTATTACA
AAAACTACAG GAAAAAAACC TGATATTGTA TTTGGAAAAC CAGACCCATT AATTTTGGAA
ATGATAATGA AAAAACACAA CGTTACAAAA GATGAAACAT GTGTAATTGG AGACAGACTA
TACACAGATA TCCTTTTGGG AAAAAGAGCA GAAGTTTTAA CTGTATTGGT TTTAACAGGC
GAAGCAAAGA AAGAGGATAT TACTAATATA AAGCCAGATA TAATTGCAAA CGACATAGGT
GAAATTTCAG AACACATTAG GTGA
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| Protein sequence | MTIITDDALE KLKKVRLFVL DIDGTFSLSG KLLPGSISFA KKVKNANKKF VFLTNNSNKS
IETYLKEFSN DKIKISASQI FTAGIETAEY LYEKFGPKKI YIVGNNEIKD IFKKAGHTIV
ENNPDIVVVT FDTTLNYEKL AKASIYVSKG KLFVLTNPDL NCPSEIGPIP DTGAIASIIT
KTTGKKPDIV FGKPDPLILE MIMKKHNVTK DETCVIGDRL YTDILLGKRA EVLTVLVLTG
EAKKEDITNI KPDIIANDIG EISEHIR
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