| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TBFG_13029 |
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| Symbol | ligA |
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| ID | 5223717 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Mycobacterium tuberculosis F11 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009565 |
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| Strand | - |
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| Start bp | 3384254 |
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| End bp | 3386329 |
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| Gene Length | 2076 bp |
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| Protein Length | 691 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 640607797 |
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| Product | NAD-dependent DNA ligase LigA |
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| Protein accession | YP_001288958 |
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| Protein GI | 148824204 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 203 |
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| Plasmid unclonability p-value | 0.00166162 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 192 |
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| Fosmid unclonability p-value | 0.258046 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGCTCCC CAGACGCCGA TCAGACCGCT CCCGAGGTGT TGCGGCAGTG GCAGGCACTG
GCCGAGGAGG TGCGTGAGCA CCAGTTCCGT TATTACGTGC GGGACGCGCC GATCATCAGC
GACGCGGAAT TCGACGAGCT GCTGCGCCGT CTGGAAGCCC TCGAGGAGCA GCATCCCGAG
CTGCGCACGC CCGATTCGCC GACCCAGCTG GTCGGCGGTG CCGGCTTCGC CACGGATTTC
GAGCCCGTCG ACCATCTCGA ACGAATGCTC AGCCTCGACA ACGCGTTCAC CGCCGACGAA
CTCGCCGCCT GGGCCGGCCG CATCCATGCC GAGGTCGGAG ACGCCGCACA TTACCTGTGT
GAGCTCAAGA TCGACGGCGT CGCGCTGTCT TTGGTCTACC GCGAGGGACG GCTGACCCGG
GCCTCCACCC GCGGCGACGG GCGCACCGGC GAGGACGTCA CCCTGAACGC CCGGACCATC
GCCGACGTTC CCGAACGGCT CACCCCCGGC GACGACTACC CGGTGCCCGA GGTCCTCGAG
GTCCGCGGCG AGGTCTTCTT CCGGCTGGAC GACTTCCAGG CGCTCAACGC CAGCCTCGTC
GAGGAGGGCA AGGCGCCGTT CGCCAACCCC CGCAACAGCG CGGCGGGATC GCTGCGCCAG
AAAGACCCGG CGGTCACCGC GCGCCGCCGG CTGCGGATGA TCTGCCACGG GCTGGGCCAC
GTGGAGGGCT TTCGCCCGGC CACCCTGCAT CAGGCATACC TGGCGTTGCG GGCATGGGGA
CTGCCGGTTT CCGAACACAC CACCCTGGCA ACCGACCTGG CCGGTGTGCG CGAGCGCATC
GACTACTGGG GCGAGCACCG CCACGAGGTG GACCACGAAA TCGACGGCGT GGTGGTCAAA
GTCGACGAGG TGGCGTTGCA GCGCAGGCTG GGTTCCACGT CGCGGGCGCC GCGCTGGGCC
ATCGCCTACA AGTACCCGCC CGAGGAAGCG CAGACCAAGC TGCTCGACAT CCGGGTGAAC
GTCGGCCGCA CCGGGCGGAT CACGCCGTTT GCGTTCATGA CGCCGGTGAA GGTGGCCGGG
TCGACGGTGG GACAGGCCAC CCTGCACAAC GCCTCGGAGA TCAAGCGCAA GGGCGTGCTG
ATCGGCGACA CCGTGGTGAT CCGCAAGGCC GGCGACGTGA TCCCCGAGGT GCTGGGACCC
GTCGTCGAAC TGCGCGATGG CTCCGAACGC GAATTCATCA TGCCCACCAC CTGCCCGGAG
TGCGGTTCGC CGTTGGCGCC GGAGAAGGAA GGCGACGCCG ACATCCGTTG CCCCAACGCC
CGCGGCTGCC CGGGGCAACT GCGGGAGCGG GTTTTCCACG TCGCCAGCCG CAACGGCCTA
GACATCGAGG TGCTCGGTTA CGAGGCGGGT GTGGCGCTCT TGCAGGCGAA GGTGATCGCC
GACGAGGGCG AGCTGTTCGC GCTGACCGAG CGGGACTTGC TGCGCACCGA CCTGTTCCGA
ACCAAGGCAG GCGAACTGTC GGCCAACGGC AAACGGCTGC TGGTCAACCT CGACAAGGCC
AAGGCGGCAC CGCTGTGGCG GGTGCTGGTG GCGCTGTCCA TCCGCCATGT CGGGCCGACG
GCGGCCCGCG CCCTGGCCAC CGAGTTCGGC AGCCTTGACG CCATCGCCGC GGCGTCCACC
GACCAGCTGG CCGCCGTCGA GGGGGTGGGG CCGACCATTG CCGCCGCGGT CACCGAGTGG
TTCGCCGTCG ACTGGCACCG CGAGATCGTC GACAAGTGGC GGGCCGCCGG GGTGCGAATG
GTCGACGAGC GTGACGAGAG TGTGCCACGC ACGCTGGCCG GGCTGACCAT CGTGGTCACC
GGCTCGCTGA CCGGTTTCTC CCGCGACGAC GCCAAGGAGG CGATCGTGGC CCGCGGCGGC
AAGGCCGCCG GCTCGGTGTC GAAGAAGACC AACTATGTCG TCGCCGGAGA CTCGCCGGGA
TCCAAATACG ACAAGGCGGT GGAGTTGGGG GTGCCGATTC TGGACGAGGA TGGGTTCCGG
AGACTGCTGG CCGACGGACC CGCGTCACGA ACGTAA
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| Protein sequence | MSSPDADQTA PEVLRQWQAL AEEVREHQFR YYVRDAPIIS DAEFDELLRR LEALEEQHPE
LRTPDSPTQL VGGAGFATDF EPVDHLERML SLDNAFTADE LAAWAGRIHA EVGDAAHYLC
ELKIDGVALS LVYREGRLTR ASTRGDGRTG EDVTLNARTI ADVPERLTPG DDYPVPEVLE
VRGEVFFRLD DFQALNASLV EEGKAPFANP RNSAAGSLRQ KDPAVTARRR LRMICHGLGH
VEGFRPATLH QAYLALRAWG LPVSEHTTLA TDLAGVRERI DYWGEHRHEV DHEIDGVVVK
VDEVALQRRL GSTSRAPRWA IAYKYPPEEA QTKLLDIRVN VGRTGRITPF AFMTPVKVAG
STVGQATLHN ASEIKRKGVL IGDTVVIRKA GDVIPEVLGP VVELRDGSER EFIMPTTCPE
CGSPLAPEKE GDADIRCPNA RGCPGQLRER VFHVASRNGL DIEVLGYEAG VALLQAKVIA
DEGELFALTE RDLLRTDLFR TKAGELSANG KRLLVNLDKA KAAPLWRVLV ALSIRHVGPT
AARALATEFG SLDAIAAAST DQLAAVEGVG PTIAAAVTEW FAVDWHREIV DKWRAAGVRM
VDERDESVPR TLAGLTIVVT GSLTGFSRDD AKEAIVARGG KAAGSVSKKT NYVVAGDSPG
SKYDKAVELG VPILDEDGFR RLLADGPASR T
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