| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_2362 |
|---|
| Symbol | |
|---|
| ID | 5206454 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter sp. PRwf-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009524 |
|---|
| Strand | - |
|---|
| Start bp | 2944355 |
|---|
| End bp | 2946016 |
|---|
| Gene Length | 1662 bp |
|---|
| Protein Length | 553 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640600625 |
|---|
| Product | thiamine pyrophosphate binding domain-containing protein |
|---|
| Protein accession | YP_001281252 |
|---|
| Protein GI | 148654159 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[H] Coenzyme transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG3961] Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCACAGC CCATCTATAC CATTGCTGAT TATCTATTTG ACCGAGTAGC TGAAGCGGGT
GCCACCGAAA TCTTCGGGGT GCCAGGCGAT TACAACTTAG CCTTTTTAGA CAATATTATT
GCTTCAAATA AACTGCGCTG GGTAGGCAAT ACCAATGAAT TAAACGCCGG TTATGCTGCT
GATGGCTATG CGCGCGAACG CCGATTTTCG GCCATGGTCA CCACCTTTGG GGTAGGTGAG
CTGTCTGCTA TTAATGCCAC TGCTGGCTCA TACGCCGAGT ATGTGCCGGT GCTGCATATT
GTGGGCGCAC CCAATACTCA GTTAAGAGAT GGCAAGCGCC GCCTACATCA CAGCTTAGGT
GATGGGGTGT TTAACCACTT TATTAAAATG GTGGAGCCTG TCAGCGTGGC CCGATCTGAG
ATTACGGCCG AAAACGCCGC CTCGGAGATT GATAGGGTAA TTCGCATGGT GCTAAAAAAG
CAGCGCCCTG GTTATTTATT ACTGTCACCT GATGTGGCCA AGCTGCCTAT TTATCGTCCC
ACCACTCAGC TCAAAGACAG TGAAGAGGAC ATCACCAGTC AAGAGGCTTT GGCTGACTTC
AAAAAAGAGC TGAGCTGCTA TATCGAAGGC AAAGCCACCA CCTTAATTGC AGACTTAATG
GTACACCGCC TGGGCCTACA ATCTCAGCTA AAAGCACTGA TAGCCGACAC TCAAATCCCC
TATGCCACTT TATCTTGGGG TAAGACCTTA CTCGATGAGC ACAGTGATCG CTGGGCGGGG
GTTTATGTGG GTGAGCCCTC GCAGCCTACG GTAAAAGATG CCATTGAAAA TGCGGAGTGT
TTGATTAAAT TGGGTGTTAA TTATACCGAC ACCACCACCT CTGGCTTTAC TCAAAAGATT
GATACCTCAA AAGTGGTCGA TATTCATCAA GAGCGTGCCA CAGTAGCCGA TAAGACCTTT
GCTCCCATCG CCATGAAGGA TGCGCTAAAA GCACTGCATG AGGTGTTAAC ATCAGGCATT
GAGGTGGTCG CCAAGCCACT TATTGCGCCA GTTGATGTGC ATCAGCAGCA AGGCGGTGAT
GATGAGCCAC TACTGCAAAA AGACTTATGG CATATTGTGG CCGACTGTTT GGATGGCAAT
AACTTAGTGT TTGCTGAGCA AGGTACCGCC TATTTTGGCA TGAGCGAAGT GCGTCTGCCT
GAAGGGGTAA CCTTCTATGG TCAGCCGCTG TGGGGCTCTA TCGGCTATAC ATTACCTGCC
AGCTTGGGGG CCGGTATAGC ATCACCTAAC AAGCGTAGTG TGCTGCTTAT CGGCGATGGC
TCAGCGCTAT TGACCATTCA AGATTTGGCG GTCATGATTC GTGAGCAGCT AAACCCAGTT
ATTTTATTAA TCAATAATGC AGGCTACACC GTAGAGCGTG CCATTCACGG CGAAGAGGAG
CTTTACAATG ACATTCCTGT GTGTGATTGG CAGGTGATGC CTCAAGCTTT TGGTGCCAAT
CAACACAATT GCTTAACCCT AAAAGCTGCG ACCCCAGCTG AGCTAAAATC AGCGCTGTCT
CAAGCGGACA AAGCCAAAGA TAAGATGGTA TTTATTGAAG TGATTACCGG CATGATGGAC
ATACCGCCGT TATTACAAGA TGTGGCGGCA TCTTTAAAAT AA
|
|---|
| Protein sequence | MSQPIYTIAD YLFDRVAEAG ATEIFGVPGD YNLAFLDNII ASNKLRWVGN TNELNAGYAA
DGYARERRFS AMVTTFGVGE LSAINATAGS YAEYVPVLHI VGAPNTQLRD GKRRLHHSLG
DGVFNHFIKM VEPVSVARSE ITAENAASEI DRVIRMVLKK QRPGYLLLSP DVAKLPIYRP
TTQLKDSEED ITSQEALADF KKELSCYIEG KATTLIADLM VHRLGLQSQL KALIADTQIP
YATLSWGKTL LDEHSDRWAG VYVGEPSQPT VKDAIENAEC LIKLGVNYTD TTTSGFTQKI
DTSKVVDIHQ ERATVADKTF APIAMKDALK ALHEVLTSGI EVVAKPLIAP VDVHQQQGGD
DEPLLQKDLW HIVADCLDGN NLVFAEQGTA YFGMSEVRLP EGVTFYGQPL WGSIGYTLPA
SLGAGIASPN KRSVLLIGDG SALLTIQDLA VMIREQLNPV ILLINNAGYT VERAIHGEEE
LYNDIPVCDW QVMPQAFGAN QHNCLTLKAA TPAELKSALS QADKAKDKMV FIEVITGMMD
IPPLLQDVAA SLK
|
|---|
| |