| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_2327 |
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| Symbol | |
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| ID | 5205642 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychrobacter sp. PRwf-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009524 |
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| Strand | - |
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| Start bp | 2893846 |
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| End bp | 2895732 |
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| Gene Length | 1887 bp |
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| Protein Length | 628 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640600590 |
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| Product | outer membrane autotransporter |
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| Protein accession | YP_001281217 |
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| Protein GI | 148654124 |
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| COG category | [I] Lipid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG3240] Phospholipase/lecithinase/hemolysin |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.542072 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTAAAT CTCACCTGTA TCAACAAGCC ACACAGCCGC GCTTGTATAC CCCCTCTATA
AAGACCTTAT CCCAAGCTAT TTTAGCCGTT ACATTAGCAG GCATAAGCAG TGCCCATGCC
AGCGACTATA GCAGCGTCAC CTTTTTTGGT GATAGCTTGA CAGATGGCGG TTATTTTAAG
CCGGTATTAG ACAAAGCAGA GTCAGGTCAA TTCACCACCA ACCCTGATAA TACTTGGGCC
ACCTCATTTG CTGAGCAGCT AGGACTTAGC TCGACCGCCA ACACCATTTT CGATAAAAAA
TCAGGCAACA ACTATGCGAT TGGCGGTGCT AGAACTGGCA TTGATGTGGA AAGAGAGGGG
ATACCTGTAG ACTCAGTTAA GACTCAGCTA GACAACTATT TGACCACTCA TCGTGTGGAC
TCGAAAGGTC TATATACGGT ATGGACTGGT GCCAATGATC TTTTTGCGGT TGTAGATGAT
TTGGGTAATG CCTCAAATAT CATCTCATCT GCTGTGGGTG ATGAAGTAGA AATTATTAAA
AAACTACATG ATAACGGCGC CAACTATATT GTCGTGCCTA ATATTCCAGA TGTGGGGCTG
ACCCCCAATT TTGTAAACAC TCCGTTTGCC TCATATGGTA CGTCGCTTTC TGATCAGTAC
AACAATGGCC TCTATTCAGG AATTAAGCAG ACAGGCGCCA ATGTTATTCC ACTAGACACC
TTTAACTTGC TGCAGCAGGT AGCGGCCAAT CCAGCAGCTT ATGGATTTAG CAACATGAAT
GAGCCTGCTT GTGGTTCGGT CAGCTCTCTT GAATGTGGTA GAGATGACTT GAAGGAAGTC
GGTGCTGAAA ACAGCTATTT CTTCGCCGAT GGCGTTCATC CGACAGGCCG CGCCCATCAG
ATGATTGCCG ATTATGCCAA TGCGGTGGTG ACTGCGCCCA GTCAAGTGGG TGTATTACCT
CACATTGCCA CCCAAGCCGG ACTGGCGACC AACCAGCGTT TGCAGACACA CATCAATGGG
CGACAAAGCT CTGCTAACAC TAAGCAAAAT ACCGGCCCTT CAATATGGGC CTCAGCCGAT
GTCAACTCTT TAGATGCAGC AGGCTTTGAT AGCAGTGGTA ATACTCAGCT ATTATTGGGT
ATGGATTTTG ATCATGCCGG CAGCCCTGAC GCCGTCAGTG GTATTTATGC CAATATGAGC
CAAACCGAGC TTGATGCCAA TAGACGCAGT GGCTTTAATG ATGTCGATTT AGATGAGCTT
GGCGTGGGTC TGTATCACAG CAATAAACTG GGTCAATTTC AGCTCAATGG CGCCATTGGC
TATGGCAAAA TCGATATGGA TCTAAACCGG ACAGTGAGTC TAGACAACAT AAAGCAAAGC
TTTAAGTCGC AAGCAGATGG TAAGCGCTAC TATGCCACGG TGCAGGCCGG CTACCCCATG
CCAATGGCCA ATATGGCTCA ATTTAGTGAT ACCACTGTGA CCCCTTATCT GGGCGCCACG
GTGAACCGAG TGACGTTAGA TGCCATTCGT GAAAAACAAG TTACAGGCAT TGCAATGCAG
TTTGAAGAGC AAAAATACAA TACCACTTAT GGCACTTTGG GTATTAAAGC CAGCAGCCGT
TTAAGTGATC GCTTAAATGT GTTTGGAGAT TTGCATTATC AAAAGCAATT GGATGACAAT
CGTAAAGCGG TCAGCGCCCG TCTAAACACT CAGCCGGATC TGCCATTTAC CACGCCACAA
TCAGAGATTG ATGATGACAG CTTTGGTATG ACGTTAGGCT TATCGCGTCA GTTTGGTAAT
ATCAATGCCA ATGCAGGCGT ATCATACTCT AGCGGCGATA ACGACGATAT GACCAGTGTG
TTTGTGGGAC TTAGCAGCTC GTTTTAA
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| Protein sequence | MIKSHLYQQA TQPRLYTPSI KTLSQAILAV TLAGISSAHA SDYSSVTFFG DSLTDGGYFK
PVLDKAESGQ FTTNPDNTWA TSFAEQLGLS STANTIFDKK SGNNYAIGGA RTGIDVEREG
IPVDSVKTQL DNYLTTHRVD SKGLYTVWTG ANDLFAVVDD LGNASNIISS AVGDEVEIIK
KLHDNGANYI VVPNIPDVGL TPNFVNTPFA SYGTSLSDQY NNGLYSGIKQ TGANVIPLDT
FNLLQQVAAN PAAYGFSNMN EPACGSVSSL ECGRDDLKEV GAENSYFFAD GVHPTGRAHQ
MIADYANAVV TAPSQVGVLP HIATQAGLAT NQRLQTHING RQSSANTKQN TGPSIWASAD
VNSLDAAGFD SSGNTQLLLG MDFDHAGSPD AVSGIYANMS QTELDANRRS GFNDVDLDEL
GVGLYHSNKL GQFQLNGAIG YGKIDMDLNR TVSLDNIKQS FKSQADGKRY YATVQAGYPM
PMANMAQFSD TTVTPYLGAT VNRVTLDAIR EKQVTGIAMQ FEEQKYNTTY GTLGIKASSR
LSDRLNVFGD LHYQKQLDDN RKAVSARLNT QPDLPFTTPQ SEIDDDSFGM TLGLSRQFGN
INANAGVSYS SGDNDDMTSV FVGLSSSF
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