| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_2308 |
|---|
| Symbol | |
|---|
| ID | 5206129 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter sp. PRwf-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009524 |
|---|
| Strand | - |
|---|
| Start bp | 2875243 |
|---|
| End bp | 2875956 |
|---|
| Gene Length | 714 bp |
|---|
| Protein Length | 237 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640600571 |
|---|
| Product | pseudouridine synthase |
|---|
| Protein accession | YP_001281198 |
|---|
| Protein GI | 148654105 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0000393862 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.0433307 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAATCT CGATAGAAAC TGTAAACCAA TTAAACCTTG AAGAAGCGGC CCGTGACACT
CAGTTTTTCA AAGACTTTAT GACCCAAGTT ACTGTCTATG AAGATGAGGA TTTATTGTTG
GTGGATAAGC CTGCCGGTCT TTTAAGCATC GATGGCAAGG ACTTAAAGGT CAGCTTACTT
TCTCGCTTAG AGCGTGCCAA TCCAGAAGTA AAACTCATTC ATCGCTTGGA TATGGACACC
TCGGGGCTCA TGATATTTGC CAAAAACAAA CAGGCACAGA CTCACATCAG TAAGCAGTTC
ATCGAGCGCA TCCCGCAAAA GGAATACCAA GCGATTGTAC AAGGCACGCT TGCCATACCC
GGCAAAAAAG GCGAGATCAA TATACCTGTA CGTTATGAGC CAAGTATTAA GCCCAAGCAC
GTGGCCGACC CTGAGTGGAA AAAGCATGCG CTAACCCATT ATGAGGTACT GCATCATGAG
CTGCGCAAAG GCCGACCGGT AACCCGAGTG GCGCTACATC CTGTAACTGG TCGCAGCCAC
CAATTAAGGG TGCACATGGT GCATTTGGGC CATGTGATTA TCGGTGATCC TATTTATGCC
GAAGGTGAAG CGCTTAGCTT GGCGCCAAGA CTTAACCTAC ATGCCCATAA ACTGCGCCTA
AAACATCCCA CTATGAACAC TTGGATGGCC TGGGAGAGTG CAGTGCCATT TTAA
|
|---|
| Protein sequence | MAISIETVNQ LNLEEAARDT QFFKDFMTQV TVYEDEDLLL VDKPAGLLSI DGKDLKVSLL
SRLERANPEV KLIHRLDMDT SGLMIFAKNK QAQTHISKQF IERIPQKEYQ AIVQGTLAIP
GKKGEINIPV RYEPSIKPKH VADPEWKKHA LTHYEVLHHE LRKGRPVTRV ALHPVTGRSH
QLRVHMVHLG HVIIGDPIYA EGEALSLAPR LNLHAHKLRL KHPTMNTWMA WESAVPF
|
|---|
| |