| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_2165 |
|---|
| Symbol | |
|---|
| ID | 5204704 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter sp. PRwf-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009524 |
|---|
| Strand | + |
|---|
| Start bp | 2702403 |
|---|
| End bp | 2703113 |
|---|
| Gene Length | 711 bp |
|---|
| Protein Length | 236 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640600412 |
|---|
| Product | cytochrome c-type biogenesis protein CcmB |
|---|
| Protein accession | YP_001281055 |
|---|
| Protein GI | 148653962 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG2386] ABC-type transport system involved in cytochrome c biogenesis, permease component |
|---|
| TIGRFAM ID | [TIGR01190] heme exporter protein CcmB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCACA ACCCATTAAA CCTAAACCAA GCAACTTCTG TCGGTATCAG CACTGCTCGA
CTATGGCGCC GTGAATGGCA GGTCAAGCAG CAAGGCGCCG TTCAATGGCT GTATCCTTTG
GTGTTGTTTT TGGTGATTAT CACCTTATTT CCACTGGCAG TCGGCAGCGA GCCACAATTA
CTGCACCGAC TAGGCGTGCC GGCTGTATGG ATAGCGGCTC TGCTGTCGTT GGTGATGGGC
GTAGATGATT TGTTTAAGCC GGCAATGGAC AATGGTACCT TAGCACAGCT GATTGTCTCT
AAGACCTCAT TACCGCTTTG GGTGCTTATT CGTCTTAGCA TTCACTGGAT ATTTAGCAGC
GGCTTTGTGG CACTTTTAAG TCTACTGGCC ATACTGTTAT TTGGATTATC TTGGGGAGAA
GCGGGCGCAC TTTTGGCCTC TATTGTCGTG GGTAGCCCCA TGCTACTTAT GCTATCGGCC
ATCGCCAGCA GCCTGACCTT ATCTTTAAAA AATGGCGCAG TTTTGGTGCC TTTAATTGCC
TTGCCGATGC AGTTGCCGGT GCTGATATTT GCCACAGGAG CGGTTGACTT GTACGCGACA
GGCCTCAATG GTCTACCCAT ATTGGCCTTA TTGGCAGCCG GTAGTATCTT ATCGATCCTC
ATTACACCTT GGGTGATTGC TATGACTCTG AAGATGGCAT GGCTTAACTG A
|
|---|
| Protein sequence | MSHNPLNLNQ ATSVGISTAR LWRREWQVKQ QGAVQWLYPL VLFLVIITLF PLAVGSEPQL
LHRLGVPAVW IAALLSLVMG VDDLFKPAMD NGTLAQLIVS KTSLPLWVLI RLSIHWIFSS
GFVALLSLLA ILLFGLSWGE AGALLASIVV GSPMLLMLSA IASSLTLSLK NGAVLVPLIA
LPMQLPVLIF ATGAVDLYAT GLNGLPILAL LAAGSILSIL ITPWVIAMTL KMAWLN
|
|---|
| |