| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_2122 |
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| Symbol | |
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| ID | 5205413 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychrobacter sp. PRwf-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009524 |
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| Strand | + |
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| Start bp | 2645245 |
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| End bp | 2647794 |
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| Gene Length | 2550 bp |
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| Protein Length | 849 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640600364 |
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| Product | RNA-binding S1 domain-containing protein |
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| Protein accession | YP_001281012 |
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| Protein GI | 148653919 |
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| COG category | [K] Transcription |
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| COG ID | [COG2183] Transcriptional accessory protein |
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| TIGRFAM ID | [TIGR00426] competence protein ComEA helix-hairpin-helix repeat region |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00161735 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0955174 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCAACCA CATTTCTTAA CTTCGATACG GATATGAACC AAACCGATAC TACAACTGCC
AACACCCCTA CCAGCCAAAG CAGCAGCAAT TTGCCGGCTG ATGTCATTGC CAACATCCAT
AATAAGCTTG CAAAAGAGCT GGGTATTAAG CCTGCGCAAG TCGATGCGTT TGTTAAGCTT
TACGACGAAG GTGCTACGGT GCCGTTCATC GCTCGTTATC GTAAAGAAAA AACACAAGGC
TTAGACGACA GCCAATTACG TGCTTTGGAA AAAGGTTTAA ACTACGAGCG TGACATGGCC
TCACGTCGTG CTAAGATTCT TGAGCTACTG CAAAGCCAAG GTAACTTAAC CGAAGCGCTG
CAATCTCGAA TTGAGCAGGC CACCTCTAAG CTTGAATTAG AGGACATCTA CCTGCCTTAT
CGCCCTCGCC GCCGCTCATT GGCTGCTAAA GCCCGTGCTG CAGGTCTGGA TAAGGTTGCT
AAAACTCTAC TCAATAATGA AGTCACGCCA CTTGACGCCC TAAGCGATTA CAGTCTGCCT
GAGACTATCA CTGATGATAC CGGCGCTGAG ATTGACGTTG ATTTTTCAGA TACCGAAAAA
CAATTAGCCG GCGTGGAAGC CATTATCATC GATGGCTGGA CCCAAGAGCT TGAGCTACTT
GATAACTTAC GTAGCGGTTT TGCTAAAACT GCCACTATCA ATTCAAGCCT AGCTTCTGAC
GAAAAACGTG AGGTGGGTGA GAAGTTCGCT GATTATTTTG AGCATAGCGA AAGCTTAGCA
CGCCTGCCCA ATCATCGCCT GCTTGCGATG CTACGTGGTC GTCAAGAAAA TGTATTGGTG
CTTAAAGTCG ATGGTGAAGA TGCTCCTTTT GTCGATAAAG TTATCAATAA ATTTGAGCTT
GAAAATACCA AGCCTCAAGA GCGTCATGAC TTTTTAATAA CTGCTGCCAA CAGCTTGTGG
AAGGATAAGT GGCGCCCGCA TTTAGAGCAC CGCTTATTGA CCGAAAAACG TCTGGCCGCA
GAAGCTGATG CTATTGATGT CTTCGCCAGT AACTTACAGC ACCTATTAAT GGCCGCCCCT
GCCGGCCGTA AAGTTATTTT AGGTGTGGAT CCTGGTATTC GTCATGGTGT AAAAATGGCG
GTGATCGATG CCCAAGGTCA AGTCATGCAA GATGGCGAAG GTAAGCCGGC CATCGCGACA
GTCTATCCAT TTGCCCCCGA TAATAAAATG GATGAGGCTA AAGCAACTAT TGCTCAGCTG
TTAAAAGACC ATCAGGTAGA GCTTGTGGCA ATCGGCAATG GTACGGCCAG CCGTGAAACC
GATGCCATGA TCAAAGAGCT GATTGAAGCC GATGAGACCA TCACAGCCAA AGCCGTCGTG
GTCAATGAAT CAGGCGCTTC TGTGTATTCT GCCAGCGAGC TTGCCAGTGA TGAGCTCGCT
GATTTAGACG TCTCTATCCG CGGTGCAGTG TCTATCGCCC GCCGTCTACA AGACCCCTTA
TCAGAGCTGG TTAAAGTTGA GCCAAAAGCC ATTGGCGTGG GTCAATATCA GCATGATGTG
AACCAAGCTC AGCTGTCTGA CAGCTTAGAT AAAGTGACGC AAGACTGTGT GAACGCAGTG
GGTGTGGATG TCAATACCGC AAGCCCTGCT ATCTTAGCCC ACATTGCCGG TCTAAACCGT
AACGTCGCTC AGCAAATTGT CAACTACCGC AAAGAACATG GTGCATTTAC TAACCGCGAG
CAGCTAAAAG ATGTGCCCAG ACTTGGGGTA AAAACCTTTG AACAGGCAGC GGGTTTCCTA
CGCATTCGTG ATGGCGAAGA GCCGCTGGAT GCTACCGGTG TGCATCCAGA GAGCTATGAC
TTGGTGAAAG CCCTATTAGA CAAATCTGGC AAGTCAATTG CTGACGTACT GGGTAATGAC
AGCCTTATCA ATACGCTAAG CACCGATGGT ATTGACGCAG CCAACGATGA CAACATCAGC
ATTGCCGCCA TCAAACAAGA GCTTGCTAAG CCTGCTCATG ACCCTCGCCC TGAGTTCAAA
ACAGCTCAGT TTAGAGACGA CGTAAACAGC GTAAGCGATC TAGAAGAAGG CATGCAGCTT
GAAGGCGTGG TTACCAATGT GACTGGTTTT GGCTGCTTCG TGGATGTTGG CGTACATCAA
GATGGCTTAG TGCATATCTC TGAGATGGCC AACGACTTTG TTGAAGACCC CATGAACTTG
GTTAAACCCG GTGATATCGT CAGCGTTCGT GTTATTTCAA TTGATGCCAA ACGCAATCGT
ATCGGCTTTA GCATGAAATC AGAAGATGCC GCTTCGGCCA AACGTGCTAC TAGCCCGCAG
CGCAGTACTG ACAAAAACGC TGAGAATGCT GCGACTAAGC CGGCCAAGGC GCGCAAAAAT
AGCCGTGCTA AACCTGCCAA TAAAGCCGCT CGTACTGCCA ATACCCGCAG TGATAAGCCA
AAGCCTAGCA AATCTGCTAA GCCCAAAGCT GAAGAGGCTA AAGTAGGCTC ACTCGGTGCC
TTGCTACAGC AAGCCGGGTT AAAAAAATAA
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| Protein sequence | MPTTFLNFDT DMNQTDTTTA NTPTSQSSSN LPADVIANIH NKLAKELGIK PAQVDAFVKL
YDEGATVPFI ARYRKEKTQG LDDSQLRALE KGLNYERDMA SRRAKILELL QSQGNLTEAL
QSRIEQATSK LELEDIYLPY RPRRRSLAAK ARAAGLDKVA KTLLNNEVTP LDALSDYSLP
ETITDDTGAE IDVDFSDTEK QLAGVEAIII DGWTQELELL DNLRSGFAKT ATINSSLASD
EKREVGEKFA DYFEHSESLA RLPNHRLLAM LRGRQENVLV LKVDGEDAPF VDKVINKFEL
ENTKPQERHD FLITAANSLW KDKWRPHLEH RLLTEKRLAA EADAIDVFAS NLQHLLMAAP
AGRKVILGVD PGIRHGVKMA VIDAQGQVMQ DGEGKPAIAT VYPFAPDNKM DEAKATIAQL
LKDHQVELVA IGNGTASRET DAMIKELIEA DETITAKAVV VNESGASVYS ASELASDELA
DLDVSIRGAV SIARRLQDPL SELVKVEPKA IGVGQYQHDV NQAQLSDSLD KVTQDCVNAV
GVDVNTASPA ILAHIAGLNR NVAQQIVNYR KEHGAFTNRE QLKDVPRLGV KTFEQAAGFL
RIRDGEEPLD ATGVHPESYD LVKALLDKSG KSIADVLGND SLINTLSTDG IDAANDDNIS
IAAIKQELAK PAHDPRPEFK TAQFRDDVNS VSDLEEGMQL EGVVTNVTGF GCFVDVGVHQ
DGLVHISEMA NDFVEDPMNL VKPGDIVSVR VISIDAKRNR IGFSMKSEDA ASAKRATSPQ
RSTDKNAENA ATKPAKARKN SRAKPANKAA RTANTRSDKP KPSKSAKPKA EEAKVGSLGA
LLQQAGLKK
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