Gene PsycPRwf_2104 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsycPRwf_2104 
Symbolipk 
ID5206036 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePsychrobacter sp. PRwf-1 
KingdomBacteria 
Replicon accessionNC_009524 
Strand
Start bp2626207 
End bp2627178 
Gene Length972 bp 
Protein Length323 aa 
Translation table11 
GC content50% 
IMG OID640600344 
Product4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 
Protein accessionYP_001280994 
Protein GI148653901 
COG category[I] Lipid transport and metabolism 
COG ID[COG1947] 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase 
TIGRFAM ID[TIGR00154] 4-diphosphocytidyl-2C-methyl-D-erythritol kinase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000370412 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones44 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCTCGT ATGCCAAGCT TAGTTTATTT TCACCGGCGA AAATCAATCT GTTTTTGCAC 
ATTACCGGTA AAAGAGCAGA TGGCTATCAT AACTTGCAGA CGGTGTTTCG TTTGCTAGAC
TGGGGTGATA CCCTAGAGTT CTTGGTCACC CAGGATAGCT TCGATCCTAC AGCGCCGATT
AATGAGCAGC ACTTACTGGT TCGCTTAAGT AGCACAGTGG CCATCACCGC ACAGGTGATG
GACAACTTGG TCATCAAAGC GGCTGTGGCG CTGCTACAGG CATGGCAAAA CAGTGCCCTC
ACACGGTCAT CTGACCCCGC GGTAACCCCT CACCTGCCGG TTATCGAAGT GACGCTCAAC
AAAGTTCTAC CAACTGGCGC AGGCCTTGGT GGCGGCTCCT CAAATGCAGC CACTACCTTA
ATAGCGCTAA ATAAGCTATG GGGCTTTCAT TATGACATTG AGGCTTTAAT CAAGATTGGC
GCAACGGTCG GCGCTGATGT GCCAATTTTT GTGCTTGGGC AAGATGCCAT TGCTGAGGGC
ATCGGCGAGC GGCTAACCCC CATCAAGTTG CCACAGCATC AATATTTGCT ATTAAATCCT
GCAGCTCATG CAGCAACCCA AGCCCTATTT GCCCACCCTG ACTTGCAGCG CAATGTGCCC
GCATTAAGCA TAGATGAGAT AAAAGCGGCA CAATCTTGCT ACTTGCAGCA GCTTAATGCG
CCATTTAGCA ATGTATTTGA GCCGGTGGTG ACCAAGTTGG TGCCTGAGGT GAATCAGGCA
CTCAATTATC TTAGACAGCT TGAGGCGCTC ACCGGCACCC AAGCACGTAT GACCGGTACC
GGCAGCAGTG TATTTTTGCC GATACCTACT GACAAAATCA GCCTCATAAC ACATCACCTT
AGCAATGCTG GGGCGCCTTG TGATTATGTA CTGACCCAAA GTTTAGATAA AAACGGGCAA
AACCCTGAAT AA
 
Protein sequence
MTSYAKLSLF SPAKINLFLH ITGKRADGYH NLQTVFRLLD WGDTLEFLVT QDSFDPTAPI 
NEQHLLVRLS STVAITAQVM DNLVIKAAVA LLQAWQNSAL TRSSDPAVTP HLPVIEVTLN
KVLPTGAGLG GGSSNAATTL IALNKLWGFH YDIEALIKIG ATVGADVPIF VLGQDAIAEG
IGERLTPIKL PQHQYLLLNP AAHAATQALF AHPDLQRNVP ALSIDEIKAA QSCYLQQLNA
PFSNVFEPVV TKLVPEVNQA LNYLRQLEAL TGTQARMTGT GSSVFLPIPT DKISLITHHL
SNAGAPCDYV LTQSLDKNGQ NPE