| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_2036 |
|---|
| Symbol | rpoB |
|---|
| ID | 5206441 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter sp. PRwf-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009524 |
|---|
| Strand | - |
|---|
| Start bp | 2537364 |
|---|
| End bp | 2541482 |
|---|
| Gene Length | 4119 bp |
|---|
| Protein Length | 1372 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640600271 |
|---|
| Product | DNA-directed RNA polymerase subunit beta |
|---|
| Protein accession | YP_001280926 |
|---|
| Protein GI | 148653833 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
|---|
| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.947917 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCATATT CCTATACTGA AAAAAAACGT ATTCGCAAAA GTTTTGCCGA GTTGCCACAT
GTAATGGATA TTCCCTATCT GTTGGCAATT CAAGTGGATT CCTATGAGCA ATTTTTGCAG
GAAAATAAAA AGCCTAAAGC GCGTGAGAAT ACAGGCCTAC AAGCTGCATT TTCATCTATT
TTCCCAATCG AAAGTAATTC AAACAACGCC GAACTACAAT TTGTTGAGTA CTACTTAGGT
GCACCAGAGT TCGATGAGCG CGAGTGTATT TCTCGTGGTT CTACTTTTGC AGCACCCTTA
CGTGTCAAAA TCCGTCTGGT TATCAAAGAC AAAGATAGCA AAGACAAAAA TAGCAAGGCT
GCTATTAAAG ACATCCGTGA GCAAAATGTA TATATGGGTG AAATCCCATT AATGACCGAT
AACGGTACCT TTATTATTAA TGGTACTGAG CGTGTTATCG TGTCGCAATT ACACCGTTCA
CCTGGTGTGT TCTTCGACCA CGATAAAGGT AAGTCACACT CAAGTGGTAA GGTGCTTTAT
AACGCCCGTA TCATTCCTTA CCGTGGTTCA TGGTTAGATT TCGAATTCGA CGCGAAAGAC
TTGGTATTCG CTCGTATTGA CCGCCGTCGT AAATTGCTAG GCACTATCAT TCTACGTGCT
CTAGGCATGG ATACTAATGA GATCCTAGAT ACCTTCTTTG AAAAAGTATC GGTTTATAAA
GGCGAAGAGC AATTTGAAAT TGACCTAGTT GCAGATCGCC TACGTGGTGA AATGGCTCAG
TTCGACATCG TATCACCAGA CGGTGAAGTG TTGGTTGAAC AAGGCAAACG TATCAATGCG
CGCCGTATTC GTCAAATAGA ACAGTCTGGC ATGAAAAAAC TGGCTGTGCC TGATGAGTAC
CTATATGAGC GTATTCTTGC CGAAGATATC GTTGTCAATG ATGAAGTGAT TGCTAAAGCA
AACACGCTTA TTGACCATGA GTTATTGGTT AAGCTAAGTG CCTTTGAAGC CAGTGAATCA
ATCAAAGAAT TCAAGATTTT ATTCACCAAC GACATCGATC ATGGTACGTA TATCGCTGAT
ACCTTACGTG CAGACAGCAC CGGTAGCCGC GAAGAAGCAT TAATCGAAAT CTATAAAGTG
ATGCGTCCAG GTGAGCCACC AACGATTGAT ACTGCTGAGA AGTTGTTTGA GAGTATGTTC
TTCAACGCTG ATCGTTATGA CTTGTCAAAC GTAGGTCGTA TGAAGTTCAA CCGCCGTTTA
GGTCGTACTT TCGAAAACAC TGACGATCCA GATATCAAAC GTGAGCAAAG CGTTCTAACC
AAAGATGACA TCATTGATGT GTTAAAAGAG CTTATCAATA TCCGTAACGG TATTGGCGAA
GTGGATGATA TTGACCACTT AGGTAACCGT CGTATTCGCT CTGTTGGCGA AATGGCAGAA
AACCAATTCC GTGTTGGTCT AGTACGTGTT GAGCGTGCGG TTAAAGAGCG TTTGAGCTCT
GCTGAATCTG ACAACTTGTC ACCACAAGAT TTGATCAACT CAAAACCTGT TGCGGCTGCG
GTAAAAGAGT TCTTTGGTTC AAGCCAGTTG TCTCAGTTCA TGGACCAAAA CAACCCGCTA
TCAGAGATTA CTCACAAGCG TCGTATCTCA GCATTAGGCC CAGGTGGTCT AACTCGTGAG
CGTGCAGGCT TTGAGGTTCG TGACGTACAC AATACTCACT ATGGTCGTGT GTGTCCTATT
GAAACGCCTG AAGGTCCAAA CATTGGTCTA ATCAACTCAT TAGCCACCTT TGCTAAGACC
AACGAATTTG GTTTCTTAGA AACCCCTTAT CGTAAAGTAG TAGATGGTAA AGTTACTGAC
GATATCGAGT ACCTATCAGC CATCGAAGAA GTCGGCACGG TTATCGCTCA GGCTGACTCT
GAGTTGGATG AAAACGGCGT ACTGGCTGAA GAGATGGTAA TGGTACGTAG CGGTGGTGAA
TCGGTACGTA TGCCAAGTGA TAAAGTGACG CATATGGATG TATCACCTAG TCAGGTTGTC
TCTGTTGCAG CAAGCTTAAT TCCATTCCTA GAGCATGATG ATGCTAACCG CGCCTTGATG
GGTTCGAACA TGCAACGTCA GGCTGTTCCT ACCTTACGTG CTGATAAGCC GTTAGTGGGT
ACCGGTATGG AGCGTCACGT AGCTCGCGAC TCAGGTGTGT GTGTTATCGC TCGCCGTGGT
GGTGTGATTG AAGACGTTGA TGCGTCACGT ATCGTGGTTC GTGTTAATGA AGATGAGATG
CAAGCGGGTG AAGCGGGTAT CGATATCTAT AACTTAATCA AATACACCCG TTCTAACCAG
AACACCTGTA TTAACCAGCG CATCATTGTT AACCAAGGTG ACGAAATCGC TGGTGGTGAT
ATCCTAGCTG ATGGTCCATC AACTGACTTA GGTGAGTTGG CTCTAGGTCA GAACATGCGT
GTGGCCTTTA TGCCATGGAA CGGTTATAAC TTCGAAGACT CGATTTTATT ATCAGAGCGT
GTGGTGAAAG AAGACCGTTT CACAACCATC CACATTCAAG AATTAACCTG TGTGGCGCGT
GACACAAAAC TAGGCACTGA AGAAATCACT GCCGATATTC CAAACGTGGG TGAAGCTGCG
CTATCTGCTC TTGATGAGTC AGGTATCGTT TATATCGGTG CTGAAGTAGA TGCAGGCGAT
ATCTTAGTTG GTAAAGTAAC GCCAAAAGGT GAGACACAAT TAACGCCAGA AGAGAAGCTA
CTCAGAGCCA TCTTCGGTGA AAAAGCAGCA GACGTTAAAG ATACCTCTTT ACGTGTGCCA
ACCTCTACCA AAGGTACGGT TATCGATGTT CAAGTCTTTA CCCGTGATGG CGTAGAAAAA
GATGCTCGTG CAAAATCAAT CGAGAAGTCG CAGCTGGACA ACTACCGCAA AGACTTAAAA
GAAGAGCTAC GTATTTTTGA AGAAGCCGCA CGTAGCCGTA TCAGTCACTT ATTAGATGGT
CAGGCCATCA GTGGTGGTGC AGGTCTTAAG TCAGGTACAG TACTGGCTGA GTCTGAGCTA
CTAGAAATGT CTTTAGAAAC GTTATTAGAC ATTCAGCCTG TTGAAGAAGA AATCGCTGAG
CGTTTGACTC AAATTCAAGA GTTCTTGGTC GATAAGCAAA AAGACATCGA TACCAAGTTC
GCTGAGAAAA AACGCAAGCT GACCGCTGGT GATGACTTAG CACACGGTGT ACAAAAAATC
GTTAAGGTTT ACCTAGCGGT GAAACGTCGC ATCCAGCCAG GTGATAAGAT GGCCGGTCGT
CATGGTAACA AGGGTGTGGT ATCTCGCATC ATGCCAGTTG AAGACATGCC TTATGATGAA
AACGGTAATC CAGTTGATAT CGTACTAAAC CCACTGGGTG TACCTTCTCG TATGAATATC
GGTCAGGTAC TTGAGACTCA CTTAGGTATG GCAGCTAAAG GTCTTGGTGA CAAGATTAAC
GGCATGATCA AAGCGCAAGC GGCAGTCACT GAGCTACGTG AATTCTTAGA CAAGATTTAC
AACAAAGTAG GCGGTGAACA AGTTGATTTA GACAGCTTGA GCGATGATGA TATCCGTGCA
CTGGCTCAAA ACCTACGTGA TGGTGTGCCT ATGGGTACCG CTGTATTTGA TGGCGCCCGT
GAGGTTCAAA TTGACGAGCT ACTAGAGCTT GCCGGTTACC CAAGCTCAGG TCAGCAGACT
TTGTATGATG GCCGTACTGG TCAGAAGTTT GACCGTCCTG TGACGGTGGG CTACATGTAC
ATGCTGAAAC TAAACCACTT AGTAGATGAC AAGATGCATG CCCGTTCGAC CGGTTCATAC
TCATTAGTAA CACAGCAGCC ATTAGGCGGT AAAGCACAGT TTGGTGGTCA GCGTTTCGGT
GAGATGGAAG TTTGGGCACT AGAAGCATAT GGTGCAACTT ACACGTTGCA AGAGATGCTA
ACAGTGAAAT CGGATGATGT TGAAGGTCGT ACGCGTATGT ATAAGAACAT CGTCGATGGT
GAGCAGTACA TGGACCCAGG CATGCCTGAA TCGTTCAACG TATTGACCAA AGAGATTAAG
TCACTGGGTA TTAATATTGA GCTAAAAGAA AGCAACTAG
|
|---|
| Protein sequence | MAYSYTEKKR IRKSFAELPH VMDIPYLLAI QVDSYEQFLQ ENKKPKAREN TGLQAAFSSI
FPIESNSNNA ELQFVEYYLG APEFDERECI SRGSTFAAPL RVKIRLVIKD KDSKDKNSKA
AIKDIREQNV YMGEIPLMTD NGTFIINGTE RVIVSQLHRS PGVFFDHDKG KSHSSGKVLY
NARIIPYRGS WLDFEFDAKD LVFARIDRRR KLLGTIILRA LGMDTNEILD TFFEKVSVYK
GEEQFEIDLV ADRLRGEMAQ FDIVSPDGEV LVEQGKRINA RRIRQIEQSG MKKLAVPDEY
LYERILAEDI VVNDEVIAKA NTLIDHELLV KLSAFEASES IKEFKILFTN DIDHGTYIAD
TLRADSTGSR EEALIEIYKV MRPGEPPTID TAEKLFESMF FNADRYDLSN VGRMKFNRRL
GRTFENTDDP DIKREQSVLT KDDIIDVLKE LINIRNGIGE VDDIDHLGNR RIRSVGEMAE
NQFRVGLVRV ERAVKERLSS AESDNLSPQD LINSKPVAAA VKEFFGSSQL SQFMDQNNPL
SEITHKRRIS ALGPGGLTRE RAGFEVRDVH NTHYGRVCPI ETPEGPNIGL INSLATFAKT
NEFGFLETPY RKVVDGKVTD DIEYLSAIEE VGTVIAQADS ELDENGVLAE EMVMVRSGGE
SVRMPSDKVT HMDVSPSQVV SVAASLIPFL EHDDANRALM GSNMQRQAVP TLRADKPLVG
TGMERHVARD SGVCVIARRG GVIEDVDASR IVVRVNEDEM QAGEAGIDIY NLIKYTRSNQ
NTCINQRIIV NQGDEIAGGD ILADGPSTDL GELALGQNMR VAFMPWNGYN FEDSILLSER
VVKEDRFTTI HIQELTCVAR DTKLGTEEIT ADIPNVGEAA LSALDESGIV YIGAEVDAGD
ILVGKVTPKG ETQLTPEEKL LRAIFGEKAA DVKDTSLRVP TSTKGTVIDV QVFTRDGVEK
DARAKSIEKS QLDNYRKDLK EELRIFEEAA RSRISHLLDG QAISGGAGLK SGTVLAESEL
LEMSLETLLD IQPVEEEIAE RLTQIQEFLV DKQKDIDTKF AEKKRKLTAG DDLAHGVQKI
VKVYLAVKRR IQPGDKMAGR HGNKGVVSRI MPVEDMPYDE NGNPVDIVLN PLGVPSRMNI
GQVLETHLGM AAKGLGDKIN GMIKAQAAVT ELREFLDKIY NKVGGEQVDL DSLSDDDIRA
LAQNLRDGVP MGTAVFDGAR EVQIDELLEL AGYPSSGQQT LYDGRTGQKF DRPVTVGYMY
MLKLNHLVDD KMHARSTGSY SLVTQQPLGG KAQFGGQRFG EMEVWALEAY GATYTLQEML
TVKSDDVEGR TRMYKNIVDG EQYMDPGMPE SFNVLTKEIK SLGINIELKE SN
|
|---|
| |